View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1351R-Insertion-2 (Length: 1075)
Name: NF1351R-Insertion-2
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 818; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 818; E-Value: 0
Query Start/End: Original strand, 8 - 1025
Target Start/End: Complemental strand, 42474940 - 42473929
Alignment:
| Q |
8 |
actcagtagtcagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataagattgcatgcatcatggaataat |
107 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474940 |
actcagtagccagtacatactaaagcacatgtaaccattggaaaaaccaagagttgcatatgactcaacaagaataagattgcatgcatcatggaataat |
42474841 |
T |
|
| Q |
108 |
ttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474840 |
ttgcacgtagctaagaaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtt |
42474741 |
T |
|
| Q |
208 |
tacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggactaactt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42474740 |
tacagcctacaaaagcatgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggaataactt |
42474641 |
T |
|
| Q |
308 |
gtatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaannnnnnnnacgtccaacca |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
42474640 |
gtatgtagtctaaagcttcaatgacataaa-gaaatgctctacacaaaactgattatataaatgcttacttgctctgctaattttttttacg-------- |
42474550 |
T |
|
| Q |
408 |
gcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagag |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||| |||||||| |||| |
|
|
| T |
42474549 |
-caaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaggtcacgacactgcttggtgggataatatctatggtcatcaagag |
42474451 |
T |
|
| Q |
508 |
agaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaa |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474450 |
agaatgatatgcaacgctttccatagaaacggactttagggaagtagactctgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaa |
42474351 |
T |
|
| Q |
608 |
accagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatata |
707 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474350 |
accagcaaaaagtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatata |
42474251 |
T |
|
| Q |
708 |
tgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtactt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42474250 |
tgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtactt |
42474151 |
T |
|
| Q |
808 |
cgagaacactccaagtgcaatcaagtgggtcgaaca-ccctagccaacctgtggtggctaagacaataaaataatccgttcgaaatgataggcttatcgc |
906 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
42474150 |
cgagaacactccaagtgcaatcaagtgggtcaaacacccctagccaacctgt-gtggctaagacaataaaataatccgttcgaaatgataagcttattgc |
42474052 |
T |
|
| Q |
907 |
acatgatgctacagggagagtaccgcgtcattattaacagtggt-cattcttttg-cccaggataacaacatgc-tatagctagaacactaga--caaca |
1001 |
Q |
| |
|
||||||||||||| |||||||||||||| || |||||||||||| |||||||||| ||||||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
42474051 |
acatgatgctaca-ggagagtaccgcgtaataattaacagtggtccattcttttgccccaggataac-acatgcttatagctagaacactagaaccaaca |
42473954 |
T |
|
| Q |
1002 |
cgtccggaaa-taatataacacatc |
1025 |
Q |
| |
|
|||||| ||| |||||||||||||| |
|
|
| T |
42473953 |
cgtccgaaaattaatataacacatc |
42473929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 25 - 880
Target Start/End: Complemental strand, 42468254 - 42467416
Alignment:
| Q |
25 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataagattgcatgcatcatggaataatttgcacgtagctaag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42468254 |
tactaaagcacatgtaaccattggaaaaaccttaagatttgcat--gactcaacaagaataagattgcatgcatcatggaataatttgcacgcagctaag |
42468157 |
T |
|
| Q |
123 |
aaaagactaagaaaatctaggaaaaaattgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtttacagcctacaaaag |
222 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42468156 |
aaaagactaagaaaatctatgaaaaaattgaacatttataaataaaatcacaagaaaagcatagaccagtagctccataaatgtttacagcctacaaaag |
42468057 |
T |
|
| Q |
223 |
catgtatccgataatgctcaaaagcttcaatgacaaaaagaaatgatgtacaaaaatgctccataagtgcatcatggactaacttgtatgtagtctaaag |
322 |
Q |
| |
|
|| ||||| ||||||||| |||||||||||||||||| |||||| ||| ||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
42468056 |
aatatatcctataatgctcgaaagcttcaatgacaaaatgaaatg-------------ctctataagtgtatcatggaataacttgtatgtagtctaaag |
42467970 |
T |
|
| Q |
323 |
cttcaa-tgacataaaagaaatgctctacacaaaactgattatataaatgcta-acttgctctgctaannnnnnnnacgtccaaccagcaaagtcttttg |
420 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||| |||||||| ||||| || |||| |||||||||||||||| |
|
|
| T |
42467969 |
cttcaaatgaca---aagaaatg-tctacacaaaactgattatataaatgctttacttgctccgctaattttttttacatccagccagcaaagtcttttg |
42467874 |
T |
|
| Q |
421 |
gtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtcatcgagagagaatgatatgca |
520 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42467873 |
gtggttcaatc-ataagttctcaaaagcatttggttctac-aagtcaagacactgtttagtgggataatatctatggtcatcgagagagaatgatatgca |
42467776 |
T |
|
| Q |
521 |
acgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagatgacaaaaaaccagcaaaatgt |
620 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
42467775 |
acgctttccatagaaatgggctttagggaagtagacgctgtttctcataattccagtgacgtaagtcctagaatgagatgacaaaaaactagcaaaaagt |
42467676 |
T |
|
| Q |
621 |
gtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccacaacatatatgaaccacaaata |
720 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42467675 |
gtcactccatctagtgttctcacctcttttcattccattagtgtccgatctaatttgaaaattattgggtcctcaccacaacatatatgaatgacaaata |
42467576 |
T |
|
| Q |
721 |
tatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcggaggtacttcgagaacactcca |
820 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||| | ||||||||| ||||||||| |||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
42467575 |
tatttcctttgtgatctatcataaagctctctttcgccgagtttttggcagtagaactctctaataggcatttgggcggaggtacaacgagaacgctcca |
42467476 |
T |
|
| Q |
821 |
agtgcaatcaagtgggtcgaacaccc-tagccaacctgtggtggctaagacaataaaataa |
880 |
Q |
| |
|
||| | |||| |||||| ||||||| ||| ||||| || |||||| | |||||||||||| |
|
|
| T |
42467475 |
agtatattcaattgggtcaaacacccgtagacaaccagt-gtggcttaaacaataaaataa |
42467416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 400 - 1025
Target Start/End: Complemental strand, 42480093 - 42479467
Alignment:
| Q |
400 |
tccaaccagcaaagtcttttggtggttcaatccataagttctcaaaagcatttggttctaccaagtcaagacactgtttagtgggataatatctgtggtc |
499 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||| ||||||| | | ||||||||||||| |||| |
|
|
| T |
42480093 |
tccagccagtaaagtcttttggtggttcaatccagaagttctcaaaagtatttggttctaccttgtcacgacactgctcactgggataatatctacggtc |
42479994 |
T |
|
| Q |
500 |
atcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatgagat |
599 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42479993 |
atcaagagagaatgatatgcaacgttttccatagaaacggactttagggaagtagacactgtttctcattattccagtggcgtaagtcctagaatgagat |
42479894 |
T |
|
| Q |
600 |
gacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
699 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42479893 |
gacaaaaaactagcaaaaagtgttactccatttagtgatctcacctctttccattccattagtgtcagatctaacttgaaaattattgggtcctcaccac |
42479794 |
T |
|
| Q |
700 |
aacatatatgaaccacaaatatatttcctttgtgctctatcataaatttctctttcgaccagtttttggaagtagaactttctactaggcatttgggcgg |
799 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
42479793 |
aacatatatgaactacaaatatatttcctttgtgctctatcataaatttccctttcgaccaatttttggcagtagaactctctgctaggcatttgggcgg |
42479694 |
T |
|
| Q |
800 |
aggtacttcgagaacactccaagtgcaatcaagtgggtcgaaca-ccctagccaacctgtggtggctaagacaataaaataatccgttcgaaatgatagg |
898 |
Q |
| |
|
|||||||| || |||| ||||||| | ||||||||||| |||| ||||||||||||| | || ||| |||||||||||||| || || |||| || | | |
|
|
| T |
42479693 |
aggtactttgaaaacagtccaagtacgttcaagtgggtcaaacacccctagccaacctct-gtcgctcagacaataaaataacccattagaaaagacaag |
42479595 |
T |
|
| Q |
899 |
cttatcgcacatgatgctacagggagagtaccgcgtcattattaacagtggt-cattc-ttttgcccaggataacaacatgc-tatagctagaacactag |
995 |
Q |
| |
|
|||||||||| |||||||| |||||| ||||||||| |||||||||||| ||||| |||| ||||||||||| || ||| |||||||| || ||||| |
|
|
| T |
42479594 |
cttatcgcac---atgctaca-tgagagttccgcgtcataattaacagtggtccattctttttccccaggataac-acgtgcttatagctacaagactag |
42479500 |
T |
|
| Q |
996 |
a--caacacgtccggaaa-taatataacacatc |
1025 |
Q |
| |
|
| ||||||||| | ||| |||||||||||||| |
|
|
| T |
42479499 |
aaccaacacgtctgaaaattaatataacacatc |
42479467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 25 - 231
Target Start/End: Complemental strand, 42480414 - 42480200
Alignment:
| Q |
25 |
tactaaagcacatgtaaccattggaaaaacc--aagagttgcatatgactcaacaagaataagattgcatgcatcatggaataatttgcacgtagctaag |
122 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
42480414 |
tactaatgcacatgtaaccattggagaaaccttaagatttgcatataactcaacaagaataagattgcatgcatcatgggatagtttgtttgtagctaac |
42480315 |
T |
|
| Q |
123 |
aa-aagactaagaaaatctaggaaaaaat-----tgaacatgtatatataaaatcacaagtaaagcatagaccagtagctccgtaaatgtttacagccta |
216 |
Q |
| |
|
|| ||||||| |||||| ||||||||| | |||||||||||| || |||| |||||||||||||| |||| ||||||| |||||||||| |||||| |
|
|
| T |
42480314 |
aataagactaggaaaatttaggaaaaattaaatttgaacatgtataaatcaaataacaagtaaagcataaaccaatagctccataaatgtttatagccta |
42480215 |
T |
|
| Q |
217 |
caaaagcatgtatcc |
231 |
Q |
| |
|
||||||||||||| |
|
|
| T |
42480214 |
ataaagcatgtatcc |
42480200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 42480188 - 42480111
Alignment:
| Q |
309 |
tatgtagtctaaagcttcaatgacataaaagaaatgctctacacaaaactgattatataaatgctaacttgctctgctaa |
388 |
Q |
| |
|
|||||||||| ||||||| ||| || |||| ||||||||||||||||||||||| | ||||||| |||||||| ||||| |
|
|
| T |
42480188 |
tatgtagtctcaagcttcgatgcca-aaaataaatgctctacacaaaactgatt-tgcaaatgcttacttgctccgctaa |
42480111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 497 - 659
Target Start/End: Original strand, 26046498 - 26046660
Alignment:
| Q |
497 |
gtcatcgagagagaatgatatgcaacgctttccatagaaacggactttagggaagtagactatgtttctcattattccagtgacgtaagtcctagaatga |
596 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||| |||| ||||| ||||| || || |||||| |||||| |
|
|
| T |
26046498 |
gtcatcaagagagaatgatatgcaacgctttccataaaaacgaactttagagaagtagatactgttcctcatatttccaaggaggtcagtccttgaatga |
26046597 |
T |
|
| Q |
597 |
gatgacaaaaaaccagcaaaatgtgtcactccatctagtgttctcacttctttccattccatt |
659 |
Q |
| |
|
|| ||||| |||| |||||| | || |||||||||||||| | | |||| |||||||||| |
|
|
| T |
26046598 |
gaagacaagaaactagcaaatagagttgctccatctagtgtttttagctcttcccattccatt |
26046660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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