View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351R-Insertion-5 (Length: 875)

Name: NF1351R-Insertion-5
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351R-Insertion-5
NF1351R-Insertion-5
[»] chr3 (4 HSPs)
chr3 (8-587)||(8528190-8528776)
chr3 (404-491)||(30700321-30700408)
chr3 (403-469)||(31795397-31795463)
chr3 (403-469)||(41081826-41081892)
[»] chr8 (2 HSPs)
chr8 (391-485)||(3157990-3158084)
chr8 (380-437)||(2687106-2687163)
[»] chr4 (2 HSPs)
chr4 (403-491)||(33607492-33607580)
chr4 (391-491)||(42889757-42889857)
[»] chr1 (3 HSPs)
chr1 (380-491)||(31321010-31321119)
chr1 (391-469)||(50317019-50317097)
chr1 (403-466)||(22684122-22684185)
[»] chr7 (3 HSPs)
chr7 (391-491)||(11671233-11671333)
chr7 (403-469)||(12180608-12180674)
chr7 (403-469)||(46246544-46246610)
[»] chr5 (3 HSPs)
chr5 (391-491)||(27756732-27756832)
chr5 (404-467)||(37498866-37498929)
chr5 (403-469)||(38626139-38626205)
[»] chr2 (2 HSPs)
chr2 (393-469)||(38728198-38728274)
chr2 (403-469)||(40304731-40304797)
[»] chr6 (1 HSPs)
chr6 (380-469)||(4496506-4496593)


Alignment Details
Target: chr3 (Bit Score: 482; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 8 - 587
Target Start/End: Complemental strand, 8528776 - 8528190
Alignment:
Q  8 atattgtattgtcaatttatgttccgttccacacactttcaaattttt-atccttttgttctttttccaatttcttatgccatcatgatgtgaactatgt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528776 atattgtattgtcaatttatgttccgttccacacactttcaaattttttatccttttgttctttttccaatttcttatgccatcatgatgtgaactatgt 8528677  T
Q  107 ttgcttcagttcaagtcatccttcactatgcatggttgtggtgaagggttagtctccttgggggagagaattgtcaatcattgtggtttgcagtcataat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528676 ttgcttcagttcaagtcatccttcactatgcatggttgtggtgaagggttagtctccttgggggagagaattgtcaatcattgtggtttgcagtcataat 8528577  T
Q  207 caatttgaaaattaatctcaacagttgtacgcaaaagatattcgattccannnnnnnaatgtaatatcaaaagactcggaacagtcatgattatgtaata 306  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||       ||||| |||||||||||||||||||||| ||||||||||||||    
T  8528576 caatttgaaaattaatctcaagagttgtacgcaaaagatattcgattccatttttttaatgtgatatcaaaagactcggaacagtgatgattatgtaata 8528477  T
Q  307 gatgagcttgaaaatgaataaggcttattagaatagcaaataaagagacaatgattagttgt-nnnnnnnngaagcttaaatggttaaatcgtccaagta 405  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  8528476 gatgagcttgaaaatgaataaagcttattagaatagcaaataaagagacaatgattagttgtaaaaaaaaagaagcttaaatggttaaatcgtccaagta 8528377  T
Q  406 agttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtcca-----aaaatgag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||| |    
T  8528376 agttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtccaaaattaaaatggg 8528277  T
Q  501 ggtaggagatgaagattcataggaaattacagtgcatctatgaatccgcacactgcataaatcgacaccagaaaacatgttgataat 587  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528276 tgtaggagatgaagattcataggaaattacagtgcatctatgaatccgcacactgcataaatcgacaccagaaaacatgttgataat 8528190  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 404 - 491
Target Start/End: Original strand, 30700321 - 30700408
Alignment:
Q  404 taagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtcc 491  Q
    ||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||| |||||||||||| |||| ||||||||||| ||||    
T  30700321 taagttcgcgtgtttttggttttcgtccttgtatctttttttgttctaaaacacaccctgtaagttataaacattttgcttttggtcc 30700408  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 31795397 - 31795463
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||||||||||||||||    
T  31795397 gtaagttcgcgtgtttttggttttcggccctgtatctttttttgttctaaaacaaaccctgtaagtt 31795463  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Original strand, 41081826 - 41081892
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||||||||||||||||    
T  41081826 gtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 41081892  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 391 - 485
Target Start/End: Complemental strand, 3158084 - 3157990
Alignment:
Q  391 taaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttt 485  Q
    ||||||||||  |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||| |||||||||||| |||| ||||||||||    
T  3158084 taaatcgtccctgtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacagaccctgtaagttataaacattttgcttt 3157990  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 380 - 437
Target Start/End: Original strand, 2687106 - 2687163
Alignment:
Q  380 gcttaaatggttaaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtat 437  Q
    |||||||| ||||||||||||| |||||||||| ||| ||| ||||| ||||||||||    
T  2687106 gcttaaatagttaaatcgtccatgtaagttcacatgtttttagtttttgcccatgtat 2687163  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 403 - 491
Target Start/End: Original strand, 33607492 - 33607580
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtcc 491  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||| ||  || |||||||||||||||| |||| |||||| |||||||||    
T  33607492 gtaagttcgcgtgtttttggttttcgtccttgtatcttttttttttctaaaacaaaccctgtaagttgtaaacattttggttttagtcc 33607580  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 42889857 - 42889757
Alignment:
Q  391 taaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtc 490  Q
    ||||||||||  |||||||||||||| ||| ||||||| || ||||||||  ||||||  || ||| ||| |||||||| |||| ||||||||||| |||    
T  42889857 taaatcgtccctgtaagttcacgtgttttttgttttcgtccttgtatctttttttgttctaaaacagaccatgtaagttataaacattttgcttttggtc 42889758  T
Q  491 c 491  Q
    |    
T  42889757 c 42889757  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 380 - 491
Target Start/End: Original strand, 31321010 - 31321119
Alignment:
Q  380 gcttaaatggttaaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattt 479  Q
    |||||||| |||||||| |||  |||||||| ||||| ||||||||||| || ||||||||  |||||||| | |||||||||||||  |  ||| ||||    
T  31321010 gcttaaatagttaaatcatccctgtaagttcgcgtgtttttggttttcgtccctgtatctt--tttgttgcgaaacaaaccctgtaaaatacaaacattt 31321107  T
Q  480 tgcttttagtcc 491  Q
    ||||||| ||||    
T  31321108 tgcttttggtcc 31321119  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 469
Target Start/End: Complemental strand, 50317097 - 50317019
Alignment:
Q  391 taaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    ||||||||||| |||||||| ||||| |||| |||||| || ||||||||  ||||||  || ||||||||||||||||    
T  50317097 taaatcgtccatgtaagttcgcgtgtttttgattttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 50317019  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 22684185 - 22684122
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaa 466  Q
    |||||||| ||||| ||||||||||| |||||||||||  ||||||  || |||||||||||||    
T  22684185 gtaagttcgcgtgtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgtaa 22684122  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 11671333 - 11671233
Alignment:
Q  391 taaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtc 490  Q
    ||||||||||  |||||||| ||||| ||| ||||||| ||||||||||   ||||||  || ||||||||||||||||  |||| ||||| |||| |||    
T  11671333 taaatcgtccccgtaagttcgcgtgttttttgttttcgtccatgtatctatttttgttctaaaacaaaccctgtaagttacaaatgttttgattttcgtc 11671234  T
Q  491 c 491  Q
    |    
T  11671233 c 11671233  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 12180674 - 12180608
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||||||||||||||||    
T  12180674 gtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 12180608  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 46246610 - 46246544
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||||||||||||||||    
T  46246610 gtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 46246544  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 27756832 - 27756732
Alignment:
Q  391 taaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagttctaaatattttgcttttagtc 490  Q
    ||||||||||   ||||||| ||||| ||| ||||||| || ||||||||  ||||||  || ||||||||||||| || |||| ||||||||||| |||    
T  27756832 taaatcgtccctctaagttcgcgtgttttttgttttcgtccctgtatctttttttgttctaaaacaaaccctgtaaattataaacattttgcttttggtc 27756733  T
Q  491 c 491  Q
    |    
T  27756732 c 27756732  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 404 - 467
Target Start/End: Complemental strand, 37498929 - 37498866
Alignment:
Q  404 taagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaag 467  Q
    ||||||| ||||| ||||||||||| |||||||||||  ||| |||||| ||||||| ||||||    
T  37498929 taagttcgcgtgtttttggttttcgtccatgtatctttttttattgcaaaacaaaccttgtaag 37498866  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 38626205 - 38626139
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| | ||| ||||||||||| |||||||||||  ||||||  || ||||||||||||||||    
T  38626205 gtaagttcgcatgtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgtaagtt 38626139  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 393 - 469
Target Start/End: Original strand, 38728198 - 38728274
Alignment:
Q  393 aatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    ||||||||  ||||||||||| || ||||||||||| |||||||||||  ||||||  || |||||||||| |||||    
T  38728198 aatcgtccctgtaagttcacgagtttttggttttcgtccatgtatctttttttgttctaaaacaaaccctgcaagtt 38728274  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 403 - 469
Target Start/End: Complemental strand, 40304797 - 40304731
Alignment:
Q  403 gtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| ||||| ||||||||||| || ||||||||  ||||||  || ||||||||||||||||    
T  40304797 gtaagttcgcgtgtttttggttttcgtccctgtatctttttttgttctaaaacaaaccctgtaagtt 40304731  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 380 - 469
Target Start/End: Original strand, 4496506 - 4496593
Alignment:
Q  380 gcttaaatggttaaatcgtccaagtaagttcacgtgtatttggttttcgcccatgtatcttcatttgttgcaatacaaaccctgtaagtt 469  Q
    |||||||| | |||||||||   |||||||||||||| ||||||||||| |||||||  || |||||||  || ||||||| ||||||||    
T  4496506 gcttaaataggtaaatcgtcattgtaagttcacgtgtttttggttttcgtccatgta--ttaatttgttctaaaacaaaccatgtaagtt 4496593  T

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