View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351R-Insertion-7 (Length: 849)

Name: NF1351R-Insertion-7
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351R-Insertion-7
NF1351R-Insertion-7
[»] chr3 (8 HSPs)
chr3 (520-844)||(32996689-32997015)
chr3 (621-689)||(5354405-5354473)
chr3 (520-571)||(17227946-17227997)
chr3 (519-554)||(38742189-38742224)
chr3 (521-567)||(41755499-41755545)
chr3 (520-569)||(21812600-21812649)
chr3 (520-569)||(45242987-45243036)
chr3 (520-553)||(46721974-46722007)
[»] chr6 (12 HSPs)
chr6 (12-507)||(30820181-30820671)
chr6 (12-346)||(30814975-30815314)
chr6 (193-305)||(30811403-30811513)
chr6 (753-844)||(24549647-24549742)
chr6 (519-569)||(15083318-15083368)
chr6 (342-432)||(30815330-30815420)
chr6 (521-569)||(3543063-3543111)
chr6 (520-600)||(33078283-33078363)
chr6 (523-569)||(3542816-3542862)
chr6 (520-602)||(24551566-24551648)
chr6 (621-674)||(24551489-24551541)
chr6 (520-569)||(33480628-33480677)
[»] chr2 (4 HSPs)
chr2 (627-844)||(24741521-24741738)
chr2 (521-602)||(24741772-24741853)
chr2 (521-569)||(4479702-4479750)
chr2 (521-569)||(14573261-14573309)
[»] chr8 (7 HSPs)
chr8 (621-704)||(25876629-25876712)
chr8 (521-704)||(7424421-7424610)
chr8 (521-605)||(25876521-25876605)
chr8 (519-571)||(1365827-1365879)
chr8 (521-569)||(34992264-34992312)
chr8 (521-571)||(61454-61504)
chr8 (520-569)||(27918047-27918096)
[»] chr4 (11 HSPs)
chr4 (622-704)||(42544596-42544678)
chr4 (521-605)||(42544488-42544572)
chr4 (519-569)||(21165445-21165495)
chr4 (519-569)||(38694954-38695004)
chr4 (520-569)||(25371545-25371594)
chr4 (521-554)||(52757813-52757846)
chr4 (521-569)||(37275088-37275136)
chr4 (526-569)||(3847891-3847934)
chr4 (522-569)||(36864818-36864865)
chr4 (521-571)||(47198605-47198655)
chr4 (521-571)||(55160065-55160114)
[»] chr1 (3 HSPs)
chr1 (520-569)||(49610705-49610754)
chr1 (521-569)||(193850-193898)
chr1 (520-569)||(43737728-43737777)
[»] scaffold0041 (1 HSPs)
scaffold0041 (519-569)||(27575-27625)
[»] chr5 (1 HSPs)
chr5 (527-569)||(4607470-4607512)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 520 - 844
Target Start/End: Complemental strand, 32997015 - 32996689
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctc-accatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnn 618  Q
    ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||                 
T  32997015 tggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttgaacttgcaaaaaaaaaaaaa 32996916  T
Q  619 nn-ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattat 717  Q
       |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996915 aaactcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattat 32996816  T
Q  718 attattcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaata 817  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32996815 attcttcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaata 32996716  T
Q  818 ctcagttttcaacaaagaaaatcaact 844  Q
    |||||||| |||||||||| |||||||    
T  32996715 ctcagtttccaacaaagaacatcaact 32996689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 621 - 689
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  621 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 689  Q
    |||||||||||||||||||||||| |  |||||||||  |||||||||| |||| | || |||||||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 571
Target Start/End: Complemental strand, 17227997 - 17227946
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 571  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  17227997 tggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 554
Target Start/End: Complemental strand, 38742224 - 38742189
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttc 554  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38742224 ttggtgccatttaatctgggaaagaagacttttttc 38742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 567
Target Start/End: Original strand, 41755499 - 41755545
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaa 567  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  41755499 ggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 21812649 - 21812600
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||| |||||    
T  21812649 tggtgccgtttaatttgggaaaggagacttttttttcatcatgaaaaagt 21812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 45243036 - 45242987
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||||    
T  45243036 tggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 553
Target Start/End: Complemental strand, 46722007 - 46721974
Alignment:
Q  520 tggtgccatttaatttgggaaagaagactttttt 553  Q
    ||||| ||||||||||||||||||||||||||||    
T  46722007 tggtgtcatttaatttgggaaagaagactttttt 46721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-107; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 12 - 507
Target Start/End: Original strand, 30820181 - 30820671
Alignment:
Q  12 attggcacaacaatgactcacggctatattacgaatgcatgatatataccaata--cctttcgaaattgtttaatgtccatggctttggccacctaactt 109  Q
    |||||||||||| |||||||||||||||||| |||| || ||||||||||||||  ||||||||||||||||| ||| ||||||  | ||||||||||||    
T  30820181 attggcacaacagtgactcacggctatattatgaatacacgatatataccaataatcctttcgaaattgtttactgttcatggccctagccacctaactt 30820280  T
Q  110 caaatcaatcgagcaaacagggttgagagaagtttgatggacagagacagaggatggtgaacatttccccg---atatgtgcatgatacatgattgtgat 206  Q
    |  |  ||| ||    |||||||||||||||||||||||| ||||| | | | || |||||||||||| |    | |||| ||| |||||||||| ||||    
T  30820281 ctgactaattgactgtacagggttgagagaagtttgatggccagagtc-gtgaatcgtgaacatttcctcccaaacatgtccatcatacatgattttgat 30820379  T
Q  207 caccaaacttcaaaataattgtctacacaagtctaattgaagtttgatgaccaaaatcaatgtatgacaaacatacttatcaaggttattagtgatatgc 306  Q
    ||||| ||||||||||||  | |  |||||| ||||| ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||    
T  30820380 caccatacttcaaaataaagggcc-cacaagcctaatagaagtttgatgaccacaatcaatgtatgacaaacatacttagaaaggttattagtgatatgc 30820478  T
Q  307 catgtattttattgtgggtcatggttgtgccaataatcacttatagttgaactccctatagatgccaaaattaaatgtttaaaagtaagtattacatttt 406  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||       |||||  |||||||||||||| |||||||| |||   |||||||||    
T  30820479 catgtattttattgtgggtcatggctgtgccaataatcacttgtagt-------cctatccatgccaaaattaaacgtttaaaaataa-agttacatttt 30820570  T
Q  407 agtcgaatcgattaaatttaaattttgcatctcacttgatagcatcatgaaaaatgtacaacatggttggctccattggactatacattggtgggaaacc 506  Q
    ||| |||| |||||||||| ||||||| |||||||||| |||||||||||||||| | |||||||||| | ||||||||||||||||| |||||||||||    
T  30820571 agttgaatggattaaatttgaattttgtatctcacttgttagcatcatgaaaaatctccaacatggtttgttccattggactatacataggtgggaaacc 30820670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 12 - 346
Target Start/End: Original strand, 30814975 - 30815314
Alignment:
Q  12 attggcacaacaatgactcacggctatattacgaatgcatgatatataccaata--cctttcgaaattgtttaatgtccatggctttggccacctaactt 109  Q
    |||| ||||||||||||||||| ||| |||| |||| |||||||||| | ||||  ||||| ||||||||||| ||| |||||   ||||||||||||||    
T  30814975 attgacacaacaatgactcacgactagattatgaatacatgatatatgctaatattccttttgaaattgtttactgttcatggtcctggccacctaactt 30815074  T
Q  110 caaatcaatcgagcaaacagggttgagagaagtttgatggacagagacagaggatggtgaacatttccccga--tatgtgcatgatacatgattgtgatc 207  Q
    || |  |||    |||| |||||| |||||||||||| || ||||||    ||||  | ||| |||| |  |  ||||| ||| |||||||||| |||||    
T  30815075 cagacaaattagccaaatagggtt-agagaagtttgagggccagagatgatggatactaaacttttctcacaaatatgtccatcatacatgattttgatc 30815173  T
Q  208 accaaacttcaaaataattgtctacacaagtctaattgaagtttgatgaccaaaatcaatgt-atgacaaacatacttatcaaggttattagtgatatgc 306  Q
    |||| |||||||||||| || ||  ||||| ||||| ||||||||||||||| ||||||||| |||||||| | ||||| |||||||||||||||||||     
T  30815174 accatacttcaaaataaatggctt-acaagcctaatagaagtttgatgaccacaatcaatgttatgacaaagagacttagcaaggttattagtgatatgt 30815272  T
Q  307 catgta--ttttattgtgggtcatggttgtgccaataatcac 346  Q
    ||||||  |||| | ||||| | |||||||||||||||||||    
T  30815273 catgtattttttgtcgtgggccgtggttgtgccaataatcac 30815314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 193 - 305
Target Start/End: Original strand, 30811403 - 30811513
Alignment:
Q  193 tacatgattgtgatcaccaaacttcaaaataattgtctacacaagtctaattgaagtttgatgaccaaaatcaatgtatgacaaacatacttatcaaggt 292  Q
    |||||||||||||| ||||||||||||||||||   || |||||| ||||| ||||||||||||||||||| ||||  |||||||| |||||| ||||||    
T  30811403 tacatgattgtgattaccaaacttcaaaataataagctgcacaagcctaatagaagtttgatgaccaaaattaatg--tgacaaacttacttagcaaggt 30811500  T
Q  293 tattagtgatatg 305  Q
    |||||||||||||    
T  30811501 tattagtgatatg 30811513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 753 - 844
Target Start/End: Complemental strand, 24549742 - 24549647
Alignment:
Q  753 aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagttttcaacaaagaaaatcaact 844  Q
    ||||||||||||||||| |||||||||||    |||||||||||| | |||||||||| |||||   ||||||||||  ||||||||| |||||||    
T  24549742 aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaact 24549647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 15083368 - 15083318
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  15083368 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 342 - 432
Target Start/End: Original strand, 30815330 - 30815420
Alignment:
Q  342 atcacttatagttgaactccctatagatgccaaaattaaatgtttaaaagtaagtattacattttagtcgaatcgattaaatttaaatttt 432  Q
    ||||||||| || ||||| ||| | ||||| ||||||||| |||||||| | | | ||| |||||||| ||||| ||||||||||||||||    
T  30815330 atcacttattgtggaacttcctgttgatgcaaaaattaaaggtttaaaattgaatgttatattttagttgaatccattaaatttaaatttt 30815420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 520 - 600
Target Start/End: Complemental strand, 33078363 - 33078283
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaa 600  Q
    ||||||| |||||||||| |||  |||||||||| | |||||| || |||| ||||||| ||||||||||||  |||||||    
T  33078363 tggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttgaa 33078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  523 tgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 520 - 602
Target Start/End: Complemental strand, 24551648 - 24551566
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 602  Q
    ||||||| ||||||||| |||   ||||||||||  ||| |||| |||||  ||||||| |||||| ||||||||||||||||    
T  24551648 tggtgccgtttaatttgagaattgagactttttttccactatgaaaaagtacctttacccaggacatctgtcgattttgaact 24551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 621 - 674
Target Start/End: Complemental strand, 24551541 - 24551489
Alignment:
Q  621 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccattt 674  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||| |||||    
T  24551541 ctcaatttattattttaatgtt-ttttcaagcttactattgcatctcctcattt 24551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 33480677 - 33480628
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  33480677 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 170; Significance: 9e-91; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 627 - 844
Target Start/End: Complemental strand, 24741738 - 24741521
Alignment:
Q  627 ttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattctt 726  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  727 cttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttt 826  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| ||||||||||||     
T  24741638 cttctcacgtacatcaaatatgaaaaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttc 24741539  T
Q  827 caacaaagaaaatcaact 844  Q
    |||||||||| |||||||    
T  24741538 caacaaagaacatcaact 24741521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 521 - 602
Target Start/End: Complemental strand, 24741853 - 24741772
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 602  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||  |||||||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaact 24741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

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Target: chr8 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 621 - 704
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  621 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 521 - 704
Target Start/End: Complemental strand, 7424610 - 7424421
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnnnn 620  Q
    ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||                   
T  7424610 ggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttttaacttgcaaaaaaaaaaaacaa 7424511  T
Q  621 ------ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 704  Q
          |||||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7424510 aaaaaactcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 521 - 605
Target Start/End: Original strand, 25876521 - 25876605
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 605  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || ||||| |||| |||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttttaacttgc 25876605  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 519 - 571
Target Start/End: Original strand, 1365827 - 1365879
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 571  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  1365827 ttggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 61454 - 61504
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 571  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

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Target: chr4 (Bit Score: 71; Significance: 1e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 622 - 704
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  622 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 704  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 521 - 605
Target Start/End: Original strand, 42544488 - 42544572
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 605  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| ||||| |||| |||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttttaacttgc 42544572  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 569
Target Start/End: Original strand, 21165445 - 21165495
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  21165445 ttggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 38695004 - 38694954
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  38695004 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 569
Target Start/End: Complemental strand, 25371594 - 25371545
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25371594 tggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 521 - 554
Target Start/End: Original strand, 52757813 - 52757846
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttc 554  Q
    ||||||||||||||||||||||||||||||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttc 52757846  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 526 - 569
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  526 catttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 569
Target Start/End: Original strand, 36864818 - 36864865
Alignment:
Q  522 gtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagt 36864865  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 571
Target Start/End: Original strand, 47198605 - 47198655
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 571  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 521 - 571
Target Start/End: Complemental strand, 55160114 - 55160065
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 571  Q
    |||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  55160114 ggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 49610705 - 49610754
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 521 - 569
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  521 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 520 - 569
Target Start/End: Original strand, 43737728 - 43737777
Alignment:
Q  520 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 519 - 569
Target Start/End: Complemental strand, 27625 - 27575
Alignment:
Q  519 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||    
T  27625 ttggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 527 - 569
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  527 atttaatttgggaaagaagacttttttctcaccatgagaaagt 569  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

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