View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351R-Insertion-8 (Length: 790)
Name: NF1351R-Insertion-8
Description: NF1351R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351R-Insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 199 - 472
Target Start/End: Complemental strand, 38005401 - 38005128
Alignment:
| Q |
199 |
cggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgag |
298 |
Q |
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| T |
38005401 |
cggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgag |
38005302 |
T |
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| Q |
299 |
aatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaa |
398 |
Q |
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| T |
38005301 |
aatgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaa |
38005202 |
T |
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| Q |
399 |
atgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
472 |
Q |
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| T |
38005201 |
atgttgatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
38005128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 548 - 790
Target Start/End: Complemental strand, 38005056 - 38004814
Alignment:
| Q |
548 |
gaggcatgatggattgagtatttgtggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
647 |
Q |
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| T |
38005056 |
gaggcatgatggattgagtatttttggggatcgatgattctaattcaagttaattgacaattgaattttattttagtgggagtcaatataattggttttc |
38004957 |
T |
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| Q |
648 |
aaagtttcattgtggtgaaatttcacttttggttccaacnnnnnnnttcagcagatattgtaattgagaataattatggatgttaaatttacttttgttc |
747 |
Q |
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| T |
38004956 |
aaagtttcattgtggtgaaatttcacttttggttccaacaaaaaaattcagcagatattgtaattgagaatagttatggatgttaaatttacttttgttc |
38004857 |
T |
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| Q |
748 |
ttatcagacgttatcatcattccgtaagatttcatgtgttcct |
790 |
Q |
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| T |
38004856 |
ttatcagacgttatcatcattccgtaagatttcttgtgttcct |
38004814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 9 - 100
Target Start/End: Complemental strand, 38005600 - 38005509
Alignment:
| Q |
9 |
tttacaacaaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
100 |
Q |
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| T |
38005600 |
tttacaacaaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
38005509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 200 - 472
Target Start/End: Original strand, 26462407 - 26462679
Alignment:
| Q |
200 |
ggtagggttccaatgccatgggaattgttgcaaccagttttgagaatattgggacattgtttgttgggtccaaataacagggatacaatgttgtttgaga |
299 |
Q |
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| T |
26462407 |
ggtagggttccaatgccatgggaattgttacaaccagttttgagaatattgggacattgtttgttgggaccaaataacaaggatacaatgttgtttgaga |
26462506 |
T |
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| Q |
300 |
atgcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgaggctttctaaaaa |
399 |
Q |
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| T |
26462507 |
aagcaagtgaagcatgtaggtgtttgtttgctagggcaatgcatgatgttaaccctaaagctattttacctatgaggagcttgttgagactttctaaaaa |
26462606 |
T |
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| Q |
400 |
tgttaatgttgatgattttgatccaactgaaccacctaagactgatgttatcactctttagtactttatggtg |
472 |
Q |
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| T |
26462607 |
tgttgttgttgatgattttgatccaactgaaccacccaagactgatgttatcactctttagtactttatggtg |
26462679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 26462213 - 26462304
Alignment:
| Q |
9 |
tttacaacaaaatctcgcaaatgccagttgcaccaaaaattgatttttgtaagttttgtaagatttgggctggtgaagatggtgacatgtat |
100 |
Q |
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| T |
26462213 |
tttacagcaaaatatctgaaatgcctgtttcaccaaaaattgatttttgtaacttttgtaagatttgggctggtgaagatggtgacatgtat |
26462304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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