View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_high_10 (Length: 477)

Name: NF1351_high_10

Description: NF1351

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1351_high_10

[»] chr3 (1 HSPs)

Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 327; E-Value: 0

Query Start/End: Original strand, 97 - 471

Target Start/End: Complemental strand, 46410062 - 46409688

Alignment:

Q	97	cagcttaatctaagtatcatctgaatcaaaatacacaggccaattccttaatttagaagtgaataattttgcatttctgctggtatggttgagaagtaga	196	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46410062	cagcttaatctaagtatcatctgaatcaaaatacacaggccaattccttaatttagaagtgaataattttgcatttctgctggtatggttgagaagtaga	46409963	T

Q	197	agaatgtcgtcactctccaatgcttcagctctgaatctaatcctcaatagaccatctacttgcccaaccacaacgagaccaataatgcttactaactaat	296	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	46409962	agaatgttgtcactctccaatgcttcagctctgaatctaatcctcaatagaccatctacttgcccaaccacaacgagaccaataatgcttactaactaat	46409863	T

Q	297	cctcagacacagagcacagcttgagcaatctaattctctacaatcctcaactctcatggtttcttcatgatgaaatgaatnnnnnnnnnnnngacattca	396	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	46409862	cctcagacacagagcacagcttgagcaatctaattctctacaatcctcaactctcatggtttcttcatgatgaaatgaataaaaagaaaaaagacattca	46409763	T

Q	397	ttttaactacaattatacaacactgaatggtccaatgtctccaggatttcattcttctgctgcaacagctagggc	471	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|
T	46409762	ttttaactacaattatacaacactgaatggtccaatgtctccaggatttcattcttctgctgcatcatctagggc	46409688	T

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