View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1351_high_12 (Length: 436)
Name: NF1351_high_12
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_high_12 |
 | |
|
| [»] scaffold0128 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 23 - 407
Target Start/End: Original strand, 33637639 - 33638020
Alignment:
| Q |
23 |
acccaattgtatatacctaacattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaatataaattaggctctcttgtggaca |
122 |
Q |
| |
|
||||||||| | ||| |||||||||||||||| ||| |||| ||||||||||||||||||||| ||||| ||||| | || | || |||| |||||||| |
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|
| T |
33637639 |
acccaattgaacatagctaacattcaccaatcgagtccaagactcttgaactccaaactctctcatttctcacaaaacaagatgggttctcatgtggaca |
33637738 |
T |
|
| Q |
123 |
taataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctcca |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637739 |
taataaaggcacagacgatccctcaaaacaacaagagttggttcatctttgggtac---aacaaaaccatcaggtaacatcatatacttacacgcctcca |
33637835 |
T |
|
| Q |
223 |
tccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacact |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33637836 |
tccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacact |
33637935 |
T |
|
| Q |
323 |
accattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatct |
407 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33637936 |
accattcacgaattgtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatct |
33638020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 173 - 403
Target Start/End: Complemental strand, 29124798 - 29124568
Alignment:
| Q |
173 |
gggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttc |
272 |
Q |
| |
|
||||| ||||| |||||||| || |||| |||||||||||| ||||||| ||||||||||| |||||||| | ||| || | || ||||||||||| |
|
|
| T |
29124798 |
gggcatttcaataaaaccattagacaacaacatatacttacatgcctccagccgcatatcaagtgataaaattattaactgatcgacaataacatttttc |
29124699 |
T |
|
| Q |
273 |
catttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaat |
372 |
Q |
| |
|
||| || |||||||||||||| | | |||||||||||| | |||| ||||||||||||| |||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
29124698 |
aattcattcatatgacaatttaagctatgacgtgctaactagttaatactaccattcacgaatggtccaacaagagtgccttttggtagaattggaaaat |
29124599 |
T |
|
| Q |
373 |
cagggcaagcaatagtctttctccaacaact |
403 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |
|
|
| T |
29124598 |
cagggcaagcaagagtctttctccaacaact |
29124568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 122 - 405
Target Start/End: Complemental strand, 31669720 - 31669440
Alignment:
| Q |
122 |
ataataaaggcacaaacgatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctcc |
221 |
Q |
| |
|
|||||||||||||| ||| ||| |||||| ||||| |||| ||| || ||||| |||||||||||||| ||| || |||||||||| | | || | |
|
|
| T |
31669720 |
ataataaaggcacatgcgactccttaaaacatcaagatttggcccattttggggcatttcaacaaaaccattagg---cagcatatacttatatgtcttc |
31669624 |
T |
|
| Q |
222 |
atccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacac |
321 |
Q |
| |
|
||| |||||||| ||||||||| ||||| |||| || | ||||||||| ||| || |||||| |||||| | | ||| |||||||| | |||| || |
|
|
| T |
31669623 |
atcttcatatcaagcgataaaattactaagtggtcgacgataacattttgaaattcattcatatggaaatttaagctatgatgtgctaacaagttaatac |
31669524 |
T |
|
| Q |
322 |
taccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactat |
405 |
Q |
| |
|
||||||||||| |||||||||| | || | || |||| ||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
31669523 |
taccattcacgaatggtccaacaaaagcgtcttttagtaaaattggaaaatcagggcaagcaaaagtctttctccaacatctat |
31669440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 325
Target Start/End: Original strand, 40794307 - 40794392
Alignment:
| Q |
240 |
aaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactacc |
325 |
Q |
| |
|
|||| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |||||||| | ||||||||||| |
|
|
| T |
40794307 |
aaaaccactaattgttggatggtaacattttcccatttataatcattactgtttaagttgtgaagtgctaactagttaacactacc |
40794392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 42 - 406
Target Start/End: Original strand, 13784367 - 13784728
Alignment:
| Q |
42 |
acattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaatataaattaggctctcttgtggacataataaaggcacaaacgat |
141 |
Q |
| |
|
||||||||||| | ||| |||| |||||||||||| ||||||| ||||||||||| | ||| | | |||| | || ||||||||||||| | ||| |
|
|
| T |
13784367 |
acattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatttgatcataataaaggcagaggcgac |
13784466 |
T |
|
| Q |
142 |
ccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataa |
241 |
Q |
| |
|
||||||||||| |||||| ||||||||||| |||||| ||| ||||||||||||| | || ||||||||||| |||| |||||| ||||| || || |
|
|
| T |
13784467 |
ccctcaaaacagcaagagctggttcatcttggggcacctcaccaaaaccatcaggcagcaaaatatacttacatttctccttccgcagatcaagtgaaaa |
13784566 |
T |
|
| Q |
242 |
aatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtcca |
341 |
Q |
| |
|
|| ||||||||| | ||| |||| ||||| ||||||||| || || |||| ||||||| |||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
13784567 |
aaccactaattgttggatagtaatattttcccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactaccattcacgaatggtcca |
13784666 |
T |
|
| Q |
342 |
acgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
406 |
Q |
| |
|
| ||| || ||||||||||||||| ||||||| | ||||||||||||||||||||||| |
|
|
| T |
13784667 |
ttggaagt---tcgtagtagaattggaaaagtagggcaatcgatagtctttctccaacaactatc |
13784728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: scaffold0128
Description:
Target: scaffold0128; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 42 - 406
Target Start/End: Original strand, 34030 - 34391
Alignment:
| Q |
42 |
acattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaatataaattaggctctcttgtggacataataaaggcacaaacgat |
141 |
Q |
| |
|
||||||||||| | ||| |||| |||||||||||| ||||||| ||||||||||| | ||| | | |||| | || ||||||||||||| | ||| |
|
|
| T |
34030 |
acattcaccaaccgagtccaagattcttgaactccatactctctcatttcccacaaaacaaaatgtgttctcatatgatcataataaaggcagaggcgac |
34129 |
T |
|
| Q |
142 |
ccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacgataa |
241 |
Q |
| |
|
||||||||||| |||||| ||||||||||| ||||| ||| |||||||| || |||| ||||||||||| | |||| |||||| ||||| || || |
|
|
| T |
34130 |
ccctcaaaacagcaagagctggttcatcttcgggcagctcaccaaaaccaatgggcaacaaaatatacttacatgtctccttccgcagatcaagtgaaaa |
34229 |
T |
|
| Q |
242 |
aatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtcca |
341 |
Q |
| |
|
|| ||||||||| | |||||||||||||| ||||||||| || || |||| ||||||| |||||||||| |||||||| ||||||||| |||||||| |
|
|
| T |
34230 |
aaccactaattgttggatggtaacattttcccatttataatcatcactgtttaagttgtgaagtgctaaccagttaacactgccattcacgaatggtcca |
34329 |
T |
|
| Q |
342 |
acgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
406 |
Q |
| |
|
| | | || ||||||||||||||| ||||||| | | ||||||||||||||||||||| |
|
|
| T |
34330 |
ttggaaat---tcgtagtagaattggaaaagtagggcaatcgagagtctttctccaacaactatc |
34391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0128; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 260 - 406
Target Start/End: Original strand, 29236 - 29379
Alignment:
| Q |
260 |
ggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagt |
359 |
Q |
| |
|
||||||||||| ||||||||| ||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| |||||||| | ||| || ||| |
|
|
| T |
29236 |
ggtaacattttcccatttataattatcacagtttacgttttgaagtgctaaccagttaacactaccattcacgaatggtccattgcaagt---tcgtagt |
29332 |
T |
|
| Q |
360 |
agaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
406 |
Q |
| |
|
|||||||||||| ||||||| | ||||||||||||||||||||| |
|
|
| T |
29333 |
agaattggaaaagtagggcaatcgggagtctttctccaacaactatc |
29379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 204 - 406
Target Start/End: Complemental strand, 3837810 - 3837608
Alignment:
| Q |
204 |
atatacttacacgcctccatccgcatatcaaacgataaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgac |
303 |
Q |
| |
|
||||||||||| |||||| | |||| ||||| ||| ||||||| ||| ||||||||||||||||||| || || ||||| ||||||||||| ||| ||| |
|
|
| T |
3837810 |
atatacttacatgcctcctttcgcaaatcaagcgaaaaaatcaataactggttgatggtaacattttccctttcatacaaatgacaatttaagttatgat |
3837711 |
T |
|
| Q |
304 |
gtgctaaccaattaacactaccattcacggatggtccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaact |
403 |
Q |
| |
|
| |||||| |||||||||||||||||| |||||||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| |||| |
|
|
| T |
3837710 |
acgttaaccagttaacactaccattcacgaatggtccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaact |
3837611 |
T |
|
| Q |
404 |
atc |
406 |
Q |
| |
|
||| |
|
|
| T |
3837610 |
atc |
3837608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 157
Target Start/End: Complemental strand, 3837975 - 3837857
Alignment:
| Q |
39 |
ctaacattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaatataaattaggctctcttgtggacataataaaggcacaaac |
138 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||||||| | ||||||||||| | ||| | || |||| ||||| |||||||| ||||| | |
|
|
| T |
3837975 |
ctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaaaacacaagc |
3837876 |
T |
|
| Q |
139 |
gatccctcaaaacaacaag |
157 |
Q |
| |
|
| | ||||||||| |||| |
|
|
| T |
3837875 |
aacctctcaaaacagcaag |
3837857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 39 - 406
Target Start/End: Complemental strand, 13456 - 13089
Alignment:
| Q |
39 |
ctaacattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaatataaattaggctctcttgtggacataataaaggcacaaac |
138 |
Q |
| |
|
|||||||||||||| ||| |||| ||||||||||||||||||| | ||||||||||| | ||| | || |||| ||||| |||||||| ||||| | |
|
|
| T |
13456 |
ctaacattcaccaactgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggttctcatgtggttataataaaaacacaagc |
13357 |
T |
|
| Q |
139 |
gatccctcaaaacaacaagagttggttcatctttgggcacttcaacaaaaccatcaggtaacatcatatacttacacgcctccatccgcatatcaaacga |
238 |
Q |
| |
|
| ||||||||||| |||| || || ||||| || |||| | || ||| || |||| ||||||||||| | |||| | |||| ||||| ||| |
|
|
| T |
13356 |
aacccctcaaaacagcaagttttagtagatcttgggacactacggttgtactatctggcaacaaaatatacttacatgtctcctttcgcaaatcaagcga |
13257 |
T |
|
| Q |
239 |
taaaatcactaattggttgatggtaacatttttccatttatacatatgacaatttatgttgtgacgtgctaaccaattaacactaccattcacggatggt |
338 |
Q |
| |
|
||||||| ||| ||||| ||||||||||||| || || ||||| ||||||||||| ||| ||| | |||||| |||||||||||||||| ||||| |
|
|
| T |
13256 |
aaaaatcaataactggttaatggtaacattttccctttcatacaaatgacaatttaagttatgatacgttaaccagttaacactaccattcagaaatggt |
13157 |
T |
|
| Q |
339 |
ccaacgagagtgcctccaagtagaattggaaaatcagggcaagcaatagtctttctccaacaactatc |
406 |
Q |
| |
|
||||||| ||| | | |||| ||||||||||||| ||||||||| ||| ||||||||| ||||||| |
|
|
| T |
13156 |
ccaacgatagtcctttgtagtaaaattggaaaatcatggcaagcaagagtatttctccaagaactatc |
13089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 20475974 - 20476032
Alignment:
| Q |
39 |
ctaacattcaccaatctagttcaagcctcttgaactccaaactctcttatttcccacaa |
97 |
Q |
| |
|
|||||||||||||| | ||| |||| ||||||||| ||||||||||| ||||||||||| |
|
|
| T |
20475974 |
ctaacattcaccaaccgagtccaagactcttgaaccccaaactctctcatttcccacaa |
20476032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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