View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_high_17 (Length: 361)

Name: NF1351_high_17
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_high_17
NF1351_high_17
[»] chr8 (5 HSPs)
chr8 (29-355)||(15151121-15151462)
chr8 (31-208)||(19442366-19442543)
chr8 (31-208)||(19578517-19578694)
chr8 (102-209)||(16821972-16822079)
chr8 (153-209)||(26738332-26738388)
[»] chr2 (7 HSPs)
chr2 (31-210)||(17673362-17673541)
chr2 (31-206)||(1644587-1644762)
chr2 (31-210)||(17628291-17628470)
chr2 (31-206)||(19569559-19569734)
chr2 (31-209)||(37081275-37081453)
chr2 (31-210)||(24578611-24578778)
chr2 (35-165)||(3563566-3563696)
[»] chr1 (4 HSPs)
chr1 (39-210)||(28538479-28538650)
chr1 (31-215)||(2900379-2900560)
chr1 (31-210)||(27908274-27908453)
chr1 (102-206)||(23971060-23971164)
[»] chr4 (4 HSPs)
chr4 (34-208)||(17405099-17405273)
chr4 (31-206)||(2946637-2946812)
chr4 (64-207)||(6136078-6136221)
chr4 (163-210)||(14134009-14134056)
[»] chr3 (2 HSPs)
chr3 (49-210)||(9021746-9021907)
chr3 (108-160)||(25226627-25226679)
[»] chr6 (3 HSPs)
chr6 (94-210)||(27991531-27991647)
chr6 (118-210)||(13627803-13627895)
chr6 (233-268)||(27991667-27991702)
[»] chr5 (5 HSPs)
chr5 (80-208)||(15023568-15023696)
chr5 (31-185)||(21714317-21714471)
chr5 (31-176)||(13502392-13502537)
chr5 (31-185)||(21788231-21788386)
chr5 (150-210)||(2808440-2808500)
[»] chr7 (3 HSPs)
chr7 (93-199)||(4633993-4634099)
chr7 (102-206)||(32238918-32239022)
chr7 (151-205)||(29676952-29677006)
[»] scaffold0010 (1 HSPs)
scaffold0010 (108-160)||(235750-235802)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 29 - 355
Target Start/End: Complemental strand, 15151462 - 15151121
Alignment:
Q  29 atatgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttata 128  Q
    |||||||||||||||||||||||| |||||||||||||||||||  |||||| ||||||||| ||||||||||||||||||||||| | || ||||||||    
T  15151462 atatgttgtctttagttaattaaacttgtcgagtgaagcatagattctggaatatggatcctagcttagagccaattcgttcacatatcaatgatttata 15151363  T
Q  129 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgggattannnnnnnnnnaca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||          |||    
T  15151362 cttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtcttttcgttcatttctgttaattttatcattttttgtgggatta-tttttttttaca 15151264  T
Q  229 gagcaccactctcttgatttgctcaagacatccaaattcataagaccgaccctgattacttcatta----------------taattgcatcatgaaatc 312  Q
    |||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||                ||||||||||||||||||    
T  15151263 gagcaccactctcttgatttgtccaagacatccaaattcataagatcgaccctgattacttcattataattgcattatgatttaattgcatcatgaaatc 15151164  T
Q  313 ataataagtttcaacaatttcataaaaccaacacctatgctac 355  Q
    ||||||||||||||||||||||||||||||||||| |||||||    
T  15151163 ataataagtttcaacaatttcataaaaccaacaccaatgctac 15151121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 19442543 - 19442366
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19442543 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19442444  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 208  Q
    ||||||| | | ||| ||| ||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  19442443 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagtattttcattcatttctcttaatcttatcattttttgt 19442366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 31 - 208
Target Start/End: Complemental strand, 19578694 - 19578517
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||||||||||||   |||| ||||||||||||| ||  |||||||| | ||  ||||||||| ||||||| |||||    
T  19578694 atgttgtctttagttaattaaacttgtcgagtgaagtccagactctggaacatggattctaacttagagctatttgtttcacatttcaaagattcatact 19578595  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 208  Q
    ||||||| | | ||| ||| ||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||    
T  19578594 tgtgttcatatcgcacaatatcaaatgaaatgtttaatagtattttcattcatttctcttaatcttatcattttttgt 19578517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 16822079 - 16821972
Alignment:
Q  102 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 201  Q
    |||| ||||||| || || |||| ||||||||||| |||||| | |||||||||||||||||||||||||||||  | |||||||||||||| ||||||     
T  16822079 aattggttcacacttcaatgattcatacttgtgtttttcttgtacaatgtcaaatgaaatgtttaatagtcttttagatcatttctcttaatcttatcaa 16821980  T
Q  202 tttttgtg 209  Q
    ||||||||    
T  16821979 tttttgtg 16821972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 209
Target Start/End: Original strand, 26738332 - 26738388
Alignment:
Q  153 aaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 209  Q
    ||||||||||| | ||||||||| | ||||||||||||| | |||| ||||||||||    
T  26738332 aaatgaaatgtatgatagtcttttcattcatttctcttattcttataattttttgtg 26738388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 17673362 - 17673541
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| |||| |||||||||| ||||||| || ||    
T  17673362 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattggttcacatttcaaagattcatgct 17673461  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  17673462 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcatttctcttaatcttatcattttttgtgg 17673541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 1644762 - 1644587
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||||||| ||||  ||||| ||| |||||||||||| ||||||||| |||| |||||||||| ||||||| ||||     
T  1644762 atgttgtctttagttaattaaacttgtcgagcgaagtctagactctgaaacatggatcctagcttagagctaatttgttcacatttcaaagattcatacc 1644663  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 206  Q
    | || |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||    
T  1644662 tatgctcttcttgcacaatgtcaaatgaaatgtttaatagtctttccatttatttctcttaatcttatcatttttt 1644587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 31 - 210
Target Start/End: Original strand, 17628291 - 17628470
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||| ||||||||||||||| ||||| | | |||||||||| || ||||||||||||| ||||||||| ||||  ||||||||| ||||||| || ||    
T  17628291 atgttgcctttagttaattaaacttgtccaataaagcatagactcttgaacatggatcctagcttagagctaattgattcacatttcaaagattcatgct 17628390  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||    
T  17628391 tgtgttcttcttgcacaacgtcaaatgaaatgtttcatagtctttccattcgtttctcttaatcttatcattttttgtgg 17628470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 19569734 - 19569559
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| | |||||||||| | |||||  | ||||||||||||| |||||||||  ||  ||||||| || ||| ||| ||| |    
T  19569734 atgttgtctttagttaattaaactagtcgagtgaaacctagactttcgaacatggatcctagcttagagctcatcggttcacaattcaaaaattcatatt 19569635  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 206  Q
    |||||| |||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||    
T  19569634 tgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttccattcatttatcttaatcttatcatttttt 19569559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 37081275 - 37081453
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||| ||||| |||| ||||||||| ||||| | ||| ||||||  ||  |||||||| |||  |||||||||| ||||||| |||||    
T  37081275 atgttgtctttagttagttaaacttgttgagtgaagcctagactccggatcatggactctaacttagagctaatcggttcacatttcaaagattcatact 37081374  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtg 209  Q
    ||||||||||||||| ||| | |||| |||||||| ||||||||||||||||||||||||| | ||||||| |||||||    
T  37081375 tgtgttcttcttgcacaatataaaataaaatgtttgatagtctttccgttcatttctcttattcttatcatgttttgtg 37081453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 24578778 - 24578611
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||| || ||||||||| ||||  ||||||||| ||||||| |||      
T  24578778 atgttgtctttagttaattaaatttgtcgagtgaaacctagactctggaacatggattctagcttagagctaattatttcacatttcaaagattcata-- 24578681  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
              ||||| ||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  24578680 ----------ttgcacaatgtcaaatgaagtgtttaatagtattttcattcatttctcttaattttatcattttttgtgg 24578611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 35 - 165
Target Start/End: Complemental strand, 3563696 - 3563566
Alignment:
Q  35 tgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtg 134  Q
    |||||||||||||||||| |||||||||||||  ||||  || ||||||||||||| ||||||||| |||| ||| | |||| ||||||| |||||||||    
T  3563696 tgtctttagttaattaaacttgtcgagtgaagtctagagtcttgaacatggatcctagcttagagctaattggtttatatttcaaagattcatacttgtg 3563597  T
Q  135 ttcttcttgcataatgtcaaatgaaatgttt 165  Q
     |||||||| | |||||| ||||||||||||    
T  3563596 ctcttcttgtaaaatgtcgaatgaaatgttt 3563566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 210
Target Start/End: Complemental strand, 28538650 - 28538479
Alignment:
Q  39 tttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttct 138  Q
    |||||||||||||| ||||| |||||||| ||||| |  ||||||||||||| ||||||||  |||| |||||||||| ||||||| |||||||||||||    
T  28538650 tttagttaattaaacttgtcaagtgaagcctagactcctgaacatggatcctagcttagagttaattggttcacatttcaaagattcatacttgtgttct 28538551  T
Q  139 tcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||| ||| ||||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||    
T  28538550 tctagcacaatgtcaaatgaaatgtttcataatctttccattcatttctcttaatcttatcattttttgtgg 28538479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 31 - 215
Target Start/End: Complemental strand, 2900560 - 2900379
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||||||||||||  |||||  || |||||||||||| ||||||||| |||| |||  ||||| |||||||||||||    
T  2900560 atgttgtctttagttaattaaacttgtcgagtgaagtctagactttgtaacatggatcctagcttagagctaattggttgtcatttcaaagatttatact 2900461  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgggatta 215  Q
    |||||   ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| ||||| ||||    
T  2900460 tgtgt---tcttgcacaatgtcaaatgaaatgtttaatagtctttccattcatttctcttaatcttgtcattttctgtggaatta 2900379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 31 - 210
Target Start/End: Complemental strand, 27908453 - 27908274
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||| ||||||||  ||||   ||||||||||||||| ||||||||| |||| |||||||||| ||| ||| |||||    
T  27908453 atgttgtctttagttaattaaacttgtagagtgaagtctagattttggaacatggatcctagcttagagctaattggttcacatttcaaatattcatact 27908354  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||||| ||||| ||||| ||||||||| |||| || ||||||| ||||||| ||||||| |||| |||||||||||    
T  27908353 tgtgttcttgttgcacaatgtgaaatgaaatatttattaatctttccattcatttttcttaatcttataattttttgtgg 27908274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 23971060 - 23971164
Alignment:
Q  102 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 201  Q
    |||| ||||||| || ||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  23971060 aattggttcacacttcaaagattcatacttgtgtttttcttgcacaatgtcaaatgaaatgtttaatagtctttcagttcatttctcttaatcttatcat 23971159  T
Q  202 ttttt 206  Q
    |||||    
T  23971160 ttttt 23971164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 34 - 208
Target Start/End: Original strand, 17405099 - 17405273
Alignment:
Q  34 ttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgt 133  Q
    ||||||||||||||||||| |||||||||||||| ||||   |||||||||||||||  |||||||| |||| ||||||| || ||| ||| ||||||||    
T  17405099 ttgtctttagttaattaaacttgtcgagtgaagcctagattttggaacatggatcctaccttagagctaattggttcacacttaaaaaattcatacttgt 17405198  T
Q  134 gttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgt 208  Q
    |||||||||||| ||||||||||||||||||||||||||||  | ||||||| ||||||| ||||||||||||||    
T  17405199 gttcttcttgcacaatgtcaaatgaaatgtttaatagtcttctcattcatttatcttaatcttatcattttttgt 17405273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 31 - 206
Target Start/End: Complemental strand, 2946812 - 2946637
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    ||||||| |||||||||||||| |||||||||||||| ||||| || |||||| |||| | | ||||||| |||| | || ||||| ||||||| ||||     
T  2946812 atgttgtttttagttaattaaaattgtcgagtgaagcctagactctagaacatagatcatagtttagagctaattggctcgcatttcaaagattcataca 2946713  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcatttttt 206  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||    
T  2946712 tgtgttcttcttgcacaatgtcaaatgaaatgttaaatagtctttccattcatttctcttaatcttatcatttttt 2946637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 64 - 207
Target Start/End: Complemental strand, 6136221 - 6136078
Alignment:
Q  64 aagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgt 163  Q
    |||| ||||| |||| ||||||||||| ||||||||| ||||  ||||||||| ||||||| |||| ||||||||||||||| ||| |||||||||||||    
T  6136221 aagcctagactctggcacatggatcctagcttagagctaattgattcacatttcaaagattcatacatgtgttcttcttgcacaatatcaaatgaaatgt 6136122  T
Q  164 ttaatagtctttccgttcatttctcttaattttatcattttttg 207  Q
    |||||||||||||| |||||||||||| || |||||||||||||    
T  6136121 ttaatagtctttccattcatttctcttgatcttatcattttttg 6136078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 14134056 - 14134009
Alignment:
Q  163 tttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  14134056 tttaatagtttttccgttcatttctcttaatcttatcattttttgtgg 14134009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 49 - 210
Target Start/End: Original strand, 9021746 - 9021907
Alignment:
Q  49 taaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataa 148  Q
    |||| |||||||||||||| ||||| |||||||||||||  | ||||||||| |||| ||| |||||| ||||||| |||||||||||||||||||| ||    
T  9021746 taaacttgtcgagtgaagcctagactctggaacatggattatagcttagagctaattggtttacatttcaaagattcatacttgtgttcttcttgcacaa 9021845  T
Q  149 tgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||||||||||||||||||| || || ||||||||| |||||  |||||||||||||||    
T  9021846 tgtcaaatgaaatgtttaatagttttccctttcatttcttttaatcgtatcattttttgtgg 9021907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 25226679 - 25226627
Alignment:
Q  108 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 160  Q
    ||||||||| ||||||| ||||| |||||||| ||||| ||||||||||||||    
T  25226679 ttcacatttcaaagattcatactcgtgttctttttgcacaatgtcaaatgaaa 25226627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 94 - 210
Target Start/End: Original strand, 27991531 - 27991647
Alignment:
Q  94 ttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaat 193  Q
    ||||||| ||||  ||||||||| || |||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  27991531 ttagagctaattgattcacatttcaatgattcatacttgtgttctttttgcataatgtaaaatgaaatgtttaatagtctttccattcatttcccttaat 27991630  T
Q  194 tttatcattttttgtgg 210  Q
     ||||||||||||||||    
T  27991631 cttatcattttttgtgg 27991647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 118 - 210
Target Start/End: Complemental strand, 13627895 - 13627803
Alignment:
Q  118 aaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    ||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||| || |||||| |||| ||||| ||||||||||||||||    
T  13627895 aaagattcatatttgtgtttttcttgcataatgtcaaataaaatgtttaatagtcatttcgttcacttcttttaatcttatcattttttgtgg 13627803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 268
Target Start/End: Original strand, 27991667 - 27991702
Alignment:
Q  233 accactctcttgatttgctcaagacatccaaattca 268  Q
    |||||||||||||||||| |||||||||||||||||    
T  27991667 accactctcttgatttgcccaagacatccaaattca 27991702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 80 - 208
Target Start/End: Original strand, 15023568 - 15023696
Alignment:
Q  80 acatggatcctggcttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgt 179  Q
    ||||||||||| | ||||||| ||||  ||||||||| ||| ||| |||||||||||||| ||| | ||||||||||||||||||||||||||||||| |    
T  15023568 acatggatcctagtttagagctaattgattcacatttcaaaaattcatacttgtgttctttttgtacaatgtcaaatgaaatgtttaatagtctttccat 15023667  T
Q  180 tcatttctcttaattttatcattttttgt 208  Q
    |||| ||||||||| ||||||||||||||    
T  15023668 tcatatctcttaatcttatcattttttgt 15023696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 21714471 - 21714317
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| |||||    
T  21714471 atgttgtctttcgttaattaaacttgtagagtgaagcctagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatact 21714372  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcattt 185  Q
    |||||||||| |||| ||| ||||||||||| ||||||||||||||  |||||||    
T  21714371 tgtgttcttcatgcacaatatcaaatgaaatatttaatagtctttcgattcattt 21714317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 176
Target Start/End: Original strand, 13502392 - 13502537
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagcatagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatact 130  Q
    |||||||||||||||||||||| |||| ||||||||| |||||  |||||||   ||||| |||||| || ||||  ||||||||| ||| ||| |||||    
T  13502392 atgttgtctttagttaattaaacttgtagagtgaagcctagactttggaacacatatcctagcttagggctaattgattcacatttcaaatattcatact 13502491  T
Q  131 tgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttc 176  Q
    ||||||||||||||| ||| || ||| |||| |||||||| |||||    
T  13502492 tgtgttcttcttgcacaatatcgaataaaatatttaatagcctttc 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 21788386 - 21788231
Alignment:
Q  31 atgttgtctttagttaattaaatttgtcgagtgaagca-tagacactggaacatggatcctggcttagagccaattcgttcacattttaaagatttatac 129  Q
    ||||||||||| |||||||||| |||| |||||||||| |||||  |||||||   |||||  ||||| || |||| |||||||||| ||| ||| ||||    
T  21788386 atgttgtctttcgttaattaaacttgtagagtgaagcactagactttggaacacatatcctaacttagggctaattggttcacatttcaaatattcatac 21788287  T
Q  130 ttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcattt 185  Q
    ||||||||||| |||| ||| ||||||||||| ||||||||| ||||  |||||||    
T  21788286 ttgtgttcttcatgcacaatatcaaatgaaatatttaatagtttttcgattcattt 21788231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 210
Target Start/End: Complemental strand, 2808500 - 2808440
Alignment:
Q  150 gtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttttgtgg 210  Q
    |||||||||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||    
T  2808500 gtcaaatgaaatatttaatagtttttccgttaatttctcttactcttatcattttttgtgg 2808440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 93 - 199
Target Start/End: Original strand, 4633993 - 4634099
Alignment:
Q  93 cttagagccaattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaa 192  Q
    |||| |||||||| |||||||||| ||||||| ||| |||| || |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  4633993 cttatagccaattggttcacatttcaaagattcatatttgtatttttcttgcataatgtcatatgaaatgtttaatagtctttccgttcatttcttttaa 4634092  T
Q  193 ttttatc 199  Q
    |||||||    
T  4634093 ttttatc 4634099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 32238918 - 32239022
Alignment:
Q  102 aattcgttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcat 201  Q
    |||| ||||||| |||||||||| ||||||| ||| || ||||| ||||||||||||||| |||||||||||||  |||||||| ||||||| |||||||    
T  32238918 aattagttcacactttaaagattcatacttgcgtttttgttgcacaatgtcaaatgaaatatttaatagtcttttggttcatttttcttaatcttatcat 32239017  T
Q  202 ttttt 206  Q
    |||||    
T  32239018 ttttt 32239022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 29676952 - 29677006
Alignment:
Q  151 tcaaatgaaatgtttaatagtctttccgttcatttctcttaattttatcattttt 205  Q
    ||||||||||| |||||||||||||  | |||||||||||||| |||| ||||||    
T  29676952 tcaaatgaaatatttaatagtctttgagctcatttctcttaatcttataattttt 29677006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 235750 - 235802
Alignment:
Q  108 ttcacattttaaagatttatacttgtgttcttcttgcataatgtcaaatgaaa 160  Q
    ||||||||| ||||||| |||||  ||||||| ||||| ||||||||||||||    
T  235750 ttcacatttcaaagattcatactcatgttctttttgcacaatgtcaaatgaaa 235802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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