View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_high_20 (Length: 349)
Name: NF1351_high_20
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_high_20 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 33845213 - 33845058
Alignment:
| Q |
9 |
aacaaaggtgattcgattaaaaagctatgttctttgaaaatgttacattttttaactcatttgtttcatattttgattgaaaaacattgattcatatatt |
108 |
Q |
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| T |
33845213 |
aacaatggtgattcgattaaaaagctatgttctttgaaaatgttacatttttgaactcatttgtttgatattttgattgaaaaacattgattcatatatt |
33845114 |
T |
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| Q |
109 |
ggtgtaatcgttttgtcacagaaagcatggaatttttcattcctccatccactgcag |
165 |
Q |
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| T |
33845113 |
ggtgtaatcgttttgtcccagaaagcatgg-atttgtcattcctccatccactgcag |
33845058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 33844985 - 33844929
Alignment:
| Q |
264 |
aagttgatcaagtcataacaattttcaccattaccctattttcaccaaacttgatta |
320 |
Q |
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| T |
33844985 |
aagttgatcaagtcataacaattttcaccattaccctattttcaccaaacttgatta |
33844929 |
T |
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