View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_high_21 (Length: 337)

Name: NF1351_high_21
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_high_21
NF1351_high_21
[»] chr1 (8 HSPs)
chr1 (35-335)||(1524267-1524567)
chr1 (245-335)||(43297868-43297958)
chr1 (244-335)||(31325502-31325591)
chr1 (244-330)||(20284358-20284444)
chr1 (251-327)||(50451411-50451487)
chr1 (244-335)||(5193604-5193695)
chr1 (247-335)||(23464849-23464937)
chr1 (251-335)||(50237115-50237199)
[»] chr8 (2 HSPs)
chr8 (29-335)||(38347762-38348067)
chr8 (244-330)||(23133137-23133223)
[»] chr5 (2 HSPs)
chr5 (29-335)||(23944309-23944615)
chr5 (257-330)||(7813346-7813419)
[»] chr7 (2 HSPs)
chr7 (244-335)||(16770514-16770605)
chr7 (218-333)||(23208421-23208536)
[»] chr3 (7 HSPs)
chr3 (244-327)||(26433253-26433336)
chr3 (248-335)||(38647732-38647819)
chr3 (244-335)||(55025352-55025443)
chr3 (244-330)||(11896657-11896743)
chr3 (255-335)||(53608850-53608930)
chr3 (245-335)||(23424008-23424098)
chr3 (254-335)||(11890296-11890377)
[»] chr2 (5 HSPs)
chr2 (244-335)||(572698-572789)
chr2 (244-330)||(14654232-14654318)
chr2 (245-330)||(42403772-42403857)
chr2 (221-335)||(19264899-19265013)
chr2 (244-330)||(16321955-16322041)
[»] chr6 (3 HSPs)
chr6 (244-333)||(12646651-12646740)
chr6 (218-335)||(35232969-35233086)
chr6 (245-335)||(24894389-24894479)
[»] chr4 (4 HSPs)
chr4 (245-330)||(46785030-46785115)
chr4 (251-327)||(3881228-3881304)
chr4 (256-335)||(7588179-7588258)
chr4 (245-306)||(48846453-48846514)


Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 35 - 335
Target Start/End: Original strand, 1524267 - 1524567
Alignment:
Q  35 aatagaattcacaggctccaactccctaatggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatatttcaagaaccttttggcca 134  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  1524267 aatagaattcacaggctccaactccctaatgacacttggtcctctgatgattccattctccaagcggaagcaaaaaaatatttcaagaaccttttggcca 1524366  T
Q  135 acacccaaccccatcaaaaccgcaccttcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaaaaccga 234  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  1524367 acacccaaccctatcaaaaccgcaccttcaatttcggcctacaccccaccattgacgagcctagcaagacctccctcacatgtcctatcaccaaaaccga 1524466  T
Q  235 agtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagat 334  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||    
T  1524467 agtcttcaatgcccttaactccataaaaccttacaaagcacccgaccctgatggttttcaatgcatcttcttcaagaaatactggcatatagttggagat 1524566  T
Q  335 g 335  Q
    |    
T  1524567 g 1524567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 43297868 - 43297958
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||  |||| ||||| || ||||||||||    
T  43297868 gcccttaactccatgaaaccctacaaagcacccgaccctgatggcttccattgcatcttcttcaaacaatattggcacatagttggagatg 43297958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 31325591 - 31325502
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||||||||||||||||||||||||||||| ||| | ||||||||||| || |||||||||||  |||| |||||||  ||||||||||    
T  31325591 tgcccttaactccatgaaaccttacaaagcacctgactcagatggtttccattgtatcttcttcaaacaatattggcata--gttggagatg 31325502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 20284358 - 20284444
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | |||||||| ||||||||    
T  20284358 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggcacattgttgg 20284444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 50451411 - 50451487
Alignment:
Q  251 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgt 327  Q
    ||||||||||||||||| ||||| |||| ||| ||||||||||| ||||||||||||||  | ||||||||||||||    
T  50451411 aactccatgaaaccttataaagctcccggcccggatggtttccattgcatcttcttcaaacagtactggcatattgt 50451487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 5193695 - 5193604
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||||| ||||||||||| ||||||||||||||||| ||||  ||||| ||||||||||| ||  |||| ||||| || ||||||||||    
T  5193695 tgcccttaattccatgaaaccatacaaagcacccgaccccgatgacttccattgcatcttctttaaacaatattggcacatagttggagatg 5193604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 23464849 - 23464937
Alignment:
Q  247 ccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||||| |||||||||||||||||||| |  || ||||| ||||||||||| || |||||  |||||||||| |||  ||||||||    
T  23464849 ccttaactctatgaaaccttacaaagcaccaggaccagatggcttccaatgcatttttttcaaacaatactggcacattactggagatg 23464937  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 335
Target Start/End: Complemental strand, 50237199 - 50237115
Alignment:
Q  251 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||| |||||||||||||||||||| |  || ||||| ||||| ||||| ||||||||  |||| ||||| |||||||| ||||    
T  50237199 aactcaatgaaaccttacaaagcacctggaccagatggcttccattgcattttcttcaaacaatattggcacattgttggtgatg 50237115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 29 - 335
Target Start/End: Original strand, 38347762 - 38348067
Alignment:
Q  29 aagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatat-ttcaagaacctt 127  Q
    ||||| |||| |||||| || || ||||||||||||||||| ||||| ||||||||  |||||||||||||| |||| |||||| |  ||||||||||||    
T  38347762 aagaataatataattcatagactacaactccctaatggcacctggtcttctgatgacaccattctccaagcgaaagctcaaaaaaaaattcaagaacctt 38347861  T
Q  128 ttggccaacacccaaccccatcaaaaccgcaccttcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcacca 227  Q
    ||||| ||| | ||||| || |||||||||||||| || | |||||||||||||||||||||||| || || |||| ||||||||| ||||| ||||  |    
T  38347862 ttggctaactctcaaccacaccaaaaccgcacctttaactacggcctacaccccaccattgatgaaccaagcaagatctccctcacttgtcccatcatta 38347961  T
Q  228 aaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgt 327  Q
    ||||||||||||||| |||||||||||||||| |||| |||||||| || |||| |||||||||||| || || || |||||| |||||| |||||| ||    
T  38347962 aaaccgaagtcttcactgcccttaactccatgcaaccctacaaagcgccggaccttgatggtttccattgtat-tttttcaagcaatact-gcatatagt 38348059  T
Q  328 tggagatg 335  Q
    ||||||||    
T  38348060 tggagatg 38348067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 23133223 - 23133137
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | |||||||| ||||||||    
T  23133223 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactggcacattgttgg 23133137  T

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Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 335
Target Start/End: Original strand, 23944309 - 23944615
Alignment:
Q  29 aagaaaaatagaattcacaggctccaactccctaatggcacttggtcctctgatgattccattctccaagcggaagcacaaaaatatttcaagaaccttt 128  Q
    ||||| ||||||||||| ||||| |||||||||||||| | |||| |  ||||  |  || |||||||||  ||||| ||||| |||||||||||||| |    
T  23944309 aagaataatagaattcataggcttcaactccctaatggtatttggacaactgacaacaccgttctccaagaagaagctcaaaagtatttcaagaacctct 23944408  T
Q  129 tggccaacacccaaccccatcaaaaccgcaccttcaatttcggcctacaccccaccattgatgagcctagtaagaactccctcacatgtcctatcaccaa 228  Q
    | |||||||||||||| ||||| ||||| || |||| |  |  ||  || || |||||||||||  |    |||   |||||||||   ||||| || ||    
T  23944409 ttgccaacacccaacctcatcataaccgaactttcattaccaaccaccaaccaaccattgatgacaccgacaagctttccctcacaaaacctattactaa 23944508  T
Q  229 aaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgtt 328  Q
     |  ||||| |||  |||||||||| |||||||||| | |||||| || | ||| |||||||| ||||| |||||||||||| ||||||| || ||||||    
T  23944509 gagtgaagtattcgctgcccttaacaccatgaaacccttcaaagcccctggcccagatggttttcaatgtatcttcttcaagcaatactgacacattgtt 23944608  T
Q  329 ggagatg 335  Q
    |||||||    
T  23944609 ggagatg 23944615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 7813346 - 7813419
Alignment:
Q  257 atgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||||||||||||||| || |  ||||| |||||||| || |||||||||||  | |||||||||||||||||    
T  7813346 atgaaaccttacaaagccccaggacctgacggtttccattgtatcttcttcaaacagtactggcatattgttgg 7813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 16770605 - 16770514
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    |||||||||||| |||||||||||||||||||| |  || ||||||||||||||||| || |||||  |||||||||| ||| |||||||||    
T  16770605 tgcccttaactctatgaaaccttacaaagcaccaggtccggatggtttccaatgcatttttttcaaacaatactggcacattattggagatg 16770514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 333
Target Start/End: Complemental strand, 23208536 - 23208421
Alignment:
Q  218 cctatcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatact 317  Q
    |||||||||||||  ||||| ||   |||||| || ||||||||||| |||||||| || | ||| || || ||||| || |||||||||||  |||| |    
T  23208536 cctatcaccaaaaatgaagtttttgttgccctcaattccatgaaaccatacaaagcccctggcccggacggcttccattgtatcttcttcaaacaatatt 23208437  T
Q  318 ggcatattgttggaga 333  Q
    ||||||| ||||||||    
T  23208436 ggcatatagttggaga 23208421  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 26433336 - 26433253
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgt 327  Q
    |||||||||||||||||| ||||||||||| || |  |||||||||||||| ||||||||||||||  | ||||||||||||||    
T  26433336 tgcccttaactccatgaagccttacaaagcccctggtcctgatggtttccattgcatcttcttcaaacagtactggcatattgt 26433253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 248 - 335
Target Start/End: Complemental strand, 38647819 - 38647732
Alignment:
Q  248 cttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||| || |||||||||||  |||| ||||| || || |||||||    
T  38647819 cttaactccatgaaaccttacaaagcacccggcccagatggtttccattgtatcttcttcaaacaatattggcacatagtcggagatg 38647732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 244 - 335
Target Start/End: Complemental strand, 55025443 - 55025352
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    |||||||||| ||||||||||||||||||| || | ||| ||||||||||||||||| || |||||  |||| ||||| ||| |||||||||    
T  55025443 tgcccttaacaccatgaaaccttacaaagctcctggcccagatggtttccaatgcatatttttcaaacaatattggcacattattggagatg 55025352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 11896657 - 11896743
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||||||||||||||||||| |||||||| || |  || ||||||||||| ||||||||||||||| | ||||| || ||||||||    
T  11896657 tgcccttaactccatgaaaccctacaaagcccctggtccggatggtttccattgcatcttcttcaagcagtactgacacattgttgg 11896743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 255 - 335
Target Start/End: Complemental strand, 53608930 - 53608850
Alignment:
Q  255 ccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||| ||||| ||||| ||||   ||||||||||||||||||||||||||||  | |||||||| || ||||||||||    
T  53608930 ccatgaagccttataaagcccccggtgctgatggtttccaatgcatcttcttcaaacagtactggcacatagttggagatg 53608850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 23424008 - 23424098
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||| |||||||||||| | ||||||||||| | | | ||||| ||||| || ||||| |||||  |||| |||||||| ||||||||||    
T  23424008 gccctcaactccatgaaaacatacaaagcacctggcacggatggattccattgtatctttttcaaacaatattggcatatagttggagatg 23424098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 335
Target Start/End: Complemental strand, 11890377 - 11890296
Alignment:
Q  254 tccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    |||||||| ||||| ||| |||| |  |||||||||||||| ||||| ||||| ||| |||| ||||| ||||| |||||||    
T  11890377 tccatgaagccttataaatcaccaggtcctgatggtttccattgcattttctttaagcaatattggcacattgtcggagatg 11890296  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 335
Target Start/End: Original strand, 572698 - 572789
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||||||||||||||||||| |||||||||||||  || ||||| ||||| ||||||||||||||  |||| ||||| || ||||||||||    
T  572698 tgcccttaactccatgaaaccctacaaagcacccgggccagatggcttccattgcatcttcttcaaacaatattggcacatagttggagatg 572789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 330
Target Start/End: Complemental strand, 14654318 - 14654232
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    |||||||||||||||||| || |||||||| || |  || ||||||||||| ||||||||||||||| | |||| ||||||| ||||    
T  14654318 tgcccttaactccatgaagccctacaaagcccctggtccagatggtttccattgcatcttcttcaagcagtactagcatattattgg 14654232  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 42403857 - 42403772
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||| ||||| ||||| |||||||| ||||| |  |||||||||||||| ||||||||||||||  |||| ||||| ||||||||    
T  42403857 gccctcaactctatgaagccttacaaggcacctggtcctgatggtttccattgcatcttcttcaaacaatattggcacattgttgg 42403772  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 221 - 335
Target Start/End: Original strand, 19264899 - 19265013
Alignment:
Q  221 atcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggc 320  Q
    ||||| ||||||||||| |||  |||||| ||||| ||||| || |||||||| || |  |||||||| || || ||||| ||||||||  |||||||||    
T  19264899 atcactaaaaccgaagtgttcgctgccctcaactctatgaagccatacaaagcccctggtcctgatgggtttcattgcattttcttcaaacaatactggc 19264998  T
Q  321 atattgttggagatg 335  Q
    | ||||| |||||||    
T  19264999 acattgtcggagatg 19265013  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 330
Target Start/End: Original strand, 16321955 - 16322041
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    |||||| |||||||||||||| ||||||||||| |  || ||||| || || ||||| ||||| ||  |||||||||| ||||||||    
T  16321955 tgccctcaactccatgaaaccctacaaagcacctggtcccgatggctttcattgcattttctttaaacaatactggcacattgttgg 16322041  T

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Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 12646740 - 12646651
Alignment:
Q  244 tgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggaga 333  Q
    |||||| |||||||||||||||||||||||||| | ||| ||||| |||||| |||| ||||||||| |||| |||||||| || |||||    
T  12646740 tgccctaaactccatgaaaccttacaaagcacctggcccggatggcttccaaagcattttcttcaagcaatattggcatatagtgggaga 12646651  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 218 - 335
Target Start/End: Original strand, 35232969 - 35233086
Alignment:
Q  218 cctatcaccaaaaccgaagtcttcaatgcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatact 317  Q
    |||||||| ||||  ||||||||   |||||| |||||||||||||| |||||||| || |  || ||||||||||| ||||| ||||||||| |||| |    
T  35232969 cctatcactaaaaatgaagtctttgctgccctaaactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatatt 35233068  T
Q  318 ggcatattgttggagatg 335  Q
    |||||||| |||||||||    
T  35233069 ggcatattattggagatg 35233086  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 335
Target Start/End: Complemental strand, 24894479 - 24894389
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    ||||| |||||||||||||| |||||||| || | | | ||||| ||||| || ||||| |||||  |||| |||||||| ||||||||||    
T  24894479 gccctcaactccatgaaaccatacaaagcccctggctcggatggattccattgtatctttttcaaacaatattggcatatagttggagatg 24894389  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 245 - 330
Target Start/End: Complemental strand, 46785115 - 46785030
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttgg 330  Q
    ||||| |||||||||||||| |||||| | || |  || ||||||||||||||||||||||||||  |||||||||| ||||||||    
T  46785115 gccctcaactccatgaaaccctacaaatctcctggtccggatggtttccaatgcatcttcttcaaacaatactggcacattgttgg 46785030  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 327
Target Start/End: Original strand, 3881228 - 3881304
Alignment:
Q  251 aactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgt 327  Q
    ||||||||||||||||| ||||| || | ||| ||||||||||| ||||||||||||||  | || |||||||||||    
T  3881228 aactccatgaaaccttataaagctcctggcccggatggtttccattgcatcttcttcaaacagtattggcatattgt 3881304  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 256 - 335
Target Start/End: Complemental strand, 7588258 - 7588179
Alignment:
Q  256 catgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttcttcaagtaatactggcatattgttggagatg 335  Q
    |||||||||||| |||||||| |  |||||||| |||||||| ||||| || ||| |||| ||||| ||| |||||||||    
T  7588258 catgaaaccttataaagcaccaggtcctgatggcttccaatgtatcttttttaagcaatattggcacattattggagatg 7588179  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 48846453 - 48846514
Alignment:
Q  245 gcccttaactccatgaaaccttacaaagcacccgaccctgatggtttccaatgcatcttctt 306  Q
    |||||| |||||||||||||||||||||| || |  |||||||| || ||||| ||||||||    
T  48846453 gcccttcactccatgaaaccttacaaagcccctggtcctgatgggtttcaatgtatcttctt 48846514  T

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