View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_high_25 (Length: 278)

Name: NF1351_high_25
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_high_25
NF1351_high_25
[»] chr5 (14 HSPs)
chr5 (30-268)||(33698527-33698769)
chr5 (34-120)||(33679814-33679900)
chr5 (39-114)||(33904399-33904474)
chr5 (34-116)||(33865885-33865967)
chr5 (37-113)||(33762767-33762843)
chr5 (37-116)||(33734305-33734384)
chr5 (37-116)||(33821635-33821714)
chr5 (196-252)||(33734537-33734593)
chr5 (46-116)||(33748786-33748856)
chr5 (46-116)||(33834906-33834976)
chr5 (206-252)||(33904606-33904652)
chr5 (215-267)||(33680120-33680172)
chr5 (204-252)||(33867043-33867091)
chr5 (196-252)||(33763367-33763423)
[»] chr8 (1 HSPs)
chr8 (39-116)||(21305875-21305952)
[»] scaffold0001 (2 HSPs)
scaffold0001 (45-114)||(148790-148859)
scaffold0001 (206-252)||(149007-149053)
[»] scaffold0023 (1 HSPs)
scaffold0023 (39-116)||(114205-114282)
[»] scaffold0247 (2 HSPs)
scaffold0247 (51-113)||(22155-22217)
scaffold0247 (196-251)||(21958-22013)
[»] chr7 (2 HSPs)
chr7 (45-114)||(5471194-5471263)
chr7 (215-252)||(5470212-5470249)
[»] scaffold0193 (1 HSPs)
scaffold0193 (46-116)||(25216-25286)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 30 - 268
Target Start/End: Original strand, 33698527 - 33698769
Alignment:
Q  30 ttttttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctatacatacaaacat-- 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||      
T  33698527 ttttttgcgcaaatttgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatctatacatacatacatac 33698626  T
Q  128 --atattatactcttacctaggtcaccaaaaatttaatttgataggtaaccaaaacaaaattaacttgatagcttacttgttccctagaagtttgtgtaa 225  Q
      ||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33698627 atatattatactcttacttaggtcaccaaaagtttaacttgataggtaaccaaaacaaaattaacttgatagcttacttgttccctagaagtttgtgtaa 33698726  T
Q  226 ccttagaatcatatcaatttcatcctcggcgaaactttctctg 268  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33698727 ccttagaatcatatcaatttcatcctcggcgaaactttctctg 33698769  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 34 - 120
Target Start/End: Original strand, 33679814 - 33679900
Alignment:
Q  34 ttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctatacata 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||    
T  33679814 ttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatctatacata 33679900  T

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Target: chr5; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 39 - 114
Target Start/End: Original strand, 33904399 - 33904474
Alignment:
Q  39 caaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatcta 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  33904399 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 33904474  T

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Target: chr5; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 33865885 - 33865967
Alignment:
Q  34 ttgcgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||  |||||||||||    
T  33865885 ttgcgtaaatgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatctata 33865967  T

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Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 37 - 113
Target Start/End: Original strand, 33762767 - 33762843
Alignment:
Q  37 cgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatct 113  Q
    |||||||||||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||  ||||||||    
T  33762767 cgcaaatttgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

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Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 33734305 - 33734384
Alignment:
Q  37 cgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    ||||||| |||||||||| | || |||||||||||||| |||||||| |||||||||||||||||||  |||||||||||    
T  33734305 cgcaaatgtgtgtgccaaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatctata 33734384  T

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Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 33821635 - 33821714
Alignment:
Q  37 cgcaaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    ||||||| ||||| |||||| || |||||||||||||| |||||||  |||||||||||||||||||  |||||||||||    
T  33821635 cgcaaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatctata 33821714  T

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Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 33734537 - 33734593
Alignment:
Q  196 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    ||||||| | |||||||||||||||||||||||||| |||||||||| |||||||||    
T  33734537 agcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctc 33734593  T

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Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 33748786 - 33748856
Alignment:
Q  46 gtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    |||| |||||| || |||||||||||||||||||||||  |||| ||||||||||||| || |||||||||    
T  33748786 gtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33748856  T

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Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 46 - 116
Target Start/End: Original strand, 33834906 - 33834976
Alignment:
Q  46 gtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    |||| |||||| || |||||||||||||||||||||||  |||| ||||||||||||| || |||||||||    
T  33834906 gtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatctata 33834976  T

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Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 33904606 - 33904652
Alignment:
Q  206 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    |||||||||||||||||||||||||| |||||||||| |||||||||    
T  33904606 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctc 33904652  T

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Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 33680120 - 33680172
Alignment:
Q  215 agtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctct 267  Q
    |||||||||| |||||||||||||||||||||||| | || ||||||||||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctct 33680172  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 33867043 - 33867091
Alignment:
Q  204 tgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    ||||||||| ||| ||||||||||||| ||||||||||| |||||||||    
T  33867043 tgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctc 33867091  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 33763367 - 33763423
Alignment:
Q  196 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    ||||||| | || ||||||||||| ||||||||||| |||| ||||| |||||||||    
T  33763367 agcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctc 33763423  T

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Target: chr8 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 39 - 116
Target Start/End: Original strand, 21305875 - 21305952
Alignment:
Q  39 caaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||    
T  21305875 caaatttgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatctata 21305952  T

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Target: scaffold0001 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 114
Target Start/End: Original strand, 148790 - 148859
Alignment:
Q  45 tgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatcta 114  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||  |||||||||    
T  148790 tgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatcta 148859  T

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Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 149007 - 149053
Alignment:
Q  206 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    |||||||||||||||||||||||||| |||||||| | |||||||||    
T  149007 ttccctagaagtttgtgtaaccttaggatcatatcgacttcatcctc 149053  T

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Target: scaffold0023 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 114282 - 114205
Alignment:
Q  39 caaatttgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    ||||| |||||||||||| || || |||||||||||||||||| ||||||||||| | |||||||  |||||||||||    
T  114282 caaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatctata 114205  T

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Target: scaffold0247 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 22217 - 22155
Alignment:
Q  51 ccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatct 113  Q
    |||||| || ||||||||||||||||||||||| ||||||||| |||||||||  ||||||||    
T  22217 ccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

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Target: scaffold0247; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 251
Target Start/End: Complemental strand, 22013 - 21958
Alignment:
Q  196 agcttacttgttccctagaagtttgtgtaaccttagaatcatatcaatttcatcct 251  Q
    ||||||| | || |||||||| ||||||||||||||||||| ||||| ||||||||    
T  22013 agcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatcct 21958  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 114
Target Start/End: Complemental strand, 5471263 - 5471194
Alignment:
Q  45 tgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatcta 114  Q
    ||||| |||||| || ||||||  ||||||||||||||||||||||||| |||||||||  |||||||||    
T  5471263 tgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatcta 5471194  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Complemental strand, 5470249 - 5470212
Alignment:
Q  215 agtttgtgtaaccttagaatcatatcaatttcatcctc 252  Q
    ||||||||||||||||| |||||||||| |||||||||    
T  5470249 agtttgtgtaaccttaggatcatatcaacttcatcctc 5470212  T

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Target: scaffold0193 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 116
Target Start/End: Complemental strand, 25286 - 25216
Alignment:
Q  46 gtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcagcgaccatctata 116  Q
    |||| |||||| || |||||||||||||||| ||||||| |||| |||||||||||||  | |||||||||    
T  25286 gtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatctata 25216  T

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