View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_high_5 (Length: 582)
Name: NF1351_high_5
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 35 - 570
Target Start/End: Complemental strand, 29007140 - 29006608
Alignment:
| Q |
35 |
cattgtcaatatcctgatgcatgtgtttgtgtctgtgcttcatagcgatcgacgaattataaataaaaatgaatgaaaaattaaagagaatgagttagtt |
134 |
Q |
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| T |
29007140 |
cattttcaatatcctgatgcatgtgtttgtgtccgtgcttcatagcaatcgacgaattataaataaagatgaatgaaaaattaaagagaatgagttagtt |
29007041 |
T |
|
| Q |
135 |
atacctggaaagttagcgaagaaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagtg--agagagagaggatgagaaatgaaaga |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||| |
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| T |
29007040 |
atacctggaaagttagcgaagaaaacgaaaagtgcaagagaaattctagtattggacgcagacattggagggatagagagagaggttgagaaatgaaaga |
29006941 |
T |
|
| Q |
233 |
aaatggaagttgaagaagtcctttatttcaaaatgttgttagtttgaaggaagagtggaagacttgacgtggccacacacgattggttggtgggttcggg |
332 |
Q |
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| T |
29006940 |
aaatggaagttgaagaagtcctttatttcaaaatgttgtta-tttgaaggaagaatggaagacttgacgtggccacacgcgattggttggtgggttgggg |
29006842 |
T |
|
| Q |
333 |
agtctagtctaagatacgtgtgcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatcaactacta |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29006841 |
agtctagtctaagatacgtgtgcattacgcacctgattgctgctaattcaataactttgccgccaataacttccattgacttcataataatca---acta |
29006745 |
T |
|
| Q |
433 |
tcatcacgactcagtctagaatgcgtaggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattg |
532 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29006744 |
tcatcacgactcagtctagaatgcataggattaagttgattggttttgtggtcaatttttataatttgtttatgctattgtgctattgtcatccctattg |
29006645 |
T |
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| Q |
533 |
tcgtcaatttttatgattttttatttatgctagatatt |
570 |
Q |
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|||||||||||||||| ||||||||||||||||||||| |
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| T |
29006644 |
tcgtcaatttttatga-tttttatttatgctagatatt |
29006608 |
T |
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