View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1351_high_6 (Length: 536)
Name: NF1351_high_6
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 206 - 528
Target Start/End: Complemental strand, 38477133 - 38476823
Alignment:
| Q |
206 |
tagatttgaagttaatatagatatattgaaaa-tagactataaaagaatcggtcatgctatcagtgagtttgaggttttaggccaatcactcaagatcag |
304 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||| ||||||||||| | |||||||||| ||||||| ||||||| || |
|
|
| T |
38477133 |
tagatttgaagttaatataggtatattgaaaaatagactataaaaaaatcggtcatgtt------gagtttgagg-------ccaatcaatcaagattag |
38477047 |
T |
|
| Q |
305 |
acggtttagatttcaaattctaaattttagatctgaatcacccgatcttgattggatagatccaaggtgttgaccgaacatgattgcatccaatcttgag |
404 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38477046 |
acagtttagatttcaacctctaaattttagatccgaatcacccgatcttgattggacagatccaaggtattgaccgaacatgattgcatccaatcttgag |
38476947 |
T |
|
| Q |
405 |
tgcgcctaatccaattcccaaacaatgattaatggaaagtggtcacacttttgacaatggagttgagatatcgaaacaaaggatacgttcacgtcacacc |
504 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38476946 |
tgcgcctaatccaattcctaaacaatgattaatggaaagtggtcacacttttgataattgagttgagatatcaaaacaaaggatacgttcacgtcacacc |
38476847 |
T |
|
| Q |
505 |
ttttgaagccgttggatattgttg |
528 |
Q |
| |
|
|||||||| ||||||||||||||| |
|
|
| T |
38476846 |
ttttgaagtcgttggatattgttg |
38476823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 38477446 - 38477317
Alignment:
| Q |
25 |
cattgttcgttcagtaatgacattgtttgtgacggtataaattgagtcttaaattattcctttatacctttcttgaccttggtttaggttttgtttttct |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38477446 |
cattgttcgttcagtaatgacattgtttgtgacggtataaatttagtcttaaat-attcctttatacctttcttaaccttggtttaggttttgtttttct |
38477348 |
T |
|
| Q |
125 |
aatttcaagtttggttctctttctacttcta |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
38477347 |
aatttcaagtttggttctctttctacttcta |
38477317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 297 - 407
Target Start/End: Complemental strand, 38501185 - 38501081
Alignment:
| Q |
297 |
aagatcagacggtttagatttcaaattctaaattttagatctgaatcacccgatcttgattggatagatccaaggtgttgaccgaacatgattgcatcca |
396 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
38501185 |
aagatcagacagtttagatttcaacctctaaattttagatc------acccgatcttgattggacagatccaatgtgttgaccgaacatgattgcatcca |
38501092 |
T |
|
| Q |
397 |
atcttgagtgc |
407 |
Q |
| |
|
||||||||||| |
|
|
| T |
38501091 |
atcttgagtgc |
38501081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 423 - 519
Target Start/End: Complemental strand, 56282451 - 56282357
Alignment:
| Q |
423 |
caaacaatgattaatggaaagtggtcacacttttgacaatggagttgagatatcgaaacaaaggatacgttcacgtcacaccttttgaagccgttgg |
519 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||||| ||||||||||||||||| |||| |||| | ||||| |||||| ||| | ||||||||| |
|
|
| T |
56282451 |
caaacaatgatgaatggaaagtgctcac--ttttgataatggagttgagatatcaaaacgaaggtcaggttcatttcacacttttcgcagccgttgg |
56282357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University