View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1351_high_8 (Length: 489)
Name: NF1351_high_8
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 67 - 462
Target Start/End: Original strand, 28967619 - 28968012
Alignment:
| Q |
67 |
cccttgcccctttcattttgaagctacatggatcattcatgagaactaacgaactatcataagttggatgaaaatgcttgatatgtagaatgaggcaggt |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28967619 |
cccttgcccctttcattttgaagctacatggatcattcatgagaactaacgaactatcataagttggatgaaaatgcttgatatgtagaatgaggcaggt |
28967718 |
T |
|
| Q |
167 |
ctgtttctgcaatgaataaagccaaggaggagtccataaagtttggttttctagaatattgactctctgtatttgnnnnnnnggaacaagaatataatag |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
28967719 |
ctgtttctgcaatgaataaagccaaggaggagtccataaagtttggttttctagaatattgactctctgtatttgtttttt-----------tataatag |
28967807 |
T |
|
| Q |
267 |
aattctttgttaggagaagttgcatcggtatctaaaacccagggagcaacaaat---------taataacaacacctcttttttccatgctcaaactgtt |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28967808 |
aattctttgttaggagaagttgcatcggtatctaaaacccagggagcaacaaattaagtttggtaataacaacacctcttttttccatgctcaaagtgtt |
28967907 |
T |
|
| Q |
358 |
atttgcaggaaaagaaacaagatccatggttagctggaataagacaaccagagactttatatgaaaaggaacatcgaatgtgataactttggctagaaac |
457 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28967908 |
atttgcagggaaagaaacaagatccatggttagctggaataagacaaccagagactttatatgaaaaggaacatcgaatgtgataactttggctagaaac |
28968007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 28965592 - 28965647
Alignment:
| Q |
9 |
gagatgaagtaagatgatagtgctaggtaattaattgccttgacattgtgagaaaatacc |
68 |
Q |
| |
|
||||||||||||| || |||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
28965592 |
gagatgaagtaaggtggtagtgctaggtaat----tgccttgaaattgtgagaaaatacc |
28965647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University