View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_10 (Length: 573)
Name: NF1351_low_10
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 28 - 573
Target Start/End: Original strand, 39778049 - 39778593
Alignment:
| Q |
28 |
acataactcattcaactgtaatgttataaggaacaaaacatacctcctgaagcaaagcaccattagctgtatcaaaaacacgaaagagcgtgcccctaat |
127 |
Q |
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| T |
39778049 |
acataactcattcaactgtaatattataaggaacaaaacatacctcctgaagcaaagcaccattagctgtatcaaaaacacgaatgagcgtgcccctaat |
39778148 |
T |
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| Q |
128 |
gctggcagtggcgagaaactttccattaaaggtgagagcaaagcacgccaaacttgaatgatgagccataacataatttatcttcttctttgaatagtgt |
227 |
Q |
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| T |
39778149 |
gctggcagtggcgagaaactttccattaaaggtgagagcaaagcacgccaaactcgaatgatgagccataacataatttatcttcttctttgaatagtgt |
39778248 |
T |
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| Q |
228 |
tccacacggacctcacccttgtgcaatccagggcacgcaagcaccattgaatcagcaagctgagaaaccacgcagagccccttagggttcgcataaatct |
327 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39778249 |
tccacacgtacctcacccttgtgcaatccagggcacgcaagcaccattgaatcagcgagctgagaaaccacgcagagccccttagggttcgcataagtct |
39778348 |
T |
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| Q |
328 |
ccaccttatgaagatgcttcaagtccttgaaaattgtagacgtaaatatgaaactccaatgccactacgatcctatctctccgaagacggacaccacgaa |
427 |
Q |
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| T |
39778349 |
ccaccttatgaagatgcttcaagtccttg-aaattgtagacgtaaatatgaaactccaatgccactacgatcctatctctccgaagacggacaccacgaa |
39778447 |
T |
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| Q |
428 |
tggcagttcggaaggacaacgagccaaaggactcgccgcggtagtcatcccatagtatgagcttgttaagagggaactgagggtgtgatccattcccgac |
527 |
Q |
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| T |
39778448 |
tggcagttcggaaggacaacgagccaaaggactcgccgcggtagtcatcccatagtatgagcttgttaagagggaactgagggtgtgatccattcccgac |
39778547 |
T |
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| Q |
528 |
tagggcgagtatgttagactggaaaagcatctcgagatgcgtgaaa |
573 |
Q |
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| T |
39778548 |
tagggcgagtatgttagactggaaaagcatctcgagatgcgtgaaa |
39778593 |
T |
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