View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_12 (Length: 531)

Name: NF1351_low_12
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_12
NF1351_low_12
[»] chr5 (2 HSPs)
chr5 (24-531)||(16961907-16962414)
chr5 (316-368)||(36639766-36639819)
[»] chr8 (6 HSPs)
chr8 (31-185)||(24827655-24827809)
chr8 (317-364)||(26815546-26815594)
chr8 (256-368)||(30011755-30011868)
chr8 (387-525)||(24827040-24827178)
chr8 (323-359)||(26762879-26762915)
chr8 (323-359)||(39560345-39560381)
[»] chr7 (2 HSPs)
chr7 (315-365)||(5376311-5376362)
chr7 (290-365)||(35169951-35170027)
[»] chr3 (2 HSPs)
chr3 (299-367)||(32803841-32803910)
chr3 (320-368)||(33262607-33262655)
[»] chr2 (1 HSPs)
chr2 (315-368)||(10231862-10231916)
[»] chr1 (4 HSPs)
chr1 (324-358)||(32408099-32408133)
chr1 (294-367)||(49364392-49364466)
chr1 (290-359)||(1882906-1882975)
chr1 (299-351)||(15867618-15867671)
[»] chr4 (2 HSPs)
chr4 (299-367)||(10997327-10997396)
chr4 (312-352)||(27032040-27032080)
[»] scaffold1396 (1 HSPs)
scaffold1396 (294-362)||(1285-1353)
[»] chr6 (1 HSPs)
chr6 (323-359)||(31650315-31650351)


Alignment Details
Target: chr5 (Bit Score: 459; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 24 - 531
Target Start/End: Original strand, 16961907 - 16962414
Alignment:
Q  24 aatgctatatccactaacttttggattgagattattgtccaacaaactgttctcaatcttaatgttgtttccatttatgccaggattaattcctgtatgt 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||| ||||||||||    
T  16961907 aatgctatatccactaacttttggattgagattattgtccaacaaaatgttctcaatctttatgttgtttccatatatgccaggattaactcctgtatgt 16962006  T
Q  124 aggaattgaattcctctagcaatgcctatgatgattgccattctttgttgccacttcagcatttccctttgtgtcttatctgttgaattgaaatttcatg 223  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16962007 aagaattgaattcctctagcaatgcctatgatgattgccattctttgttgccacttcagcatttccctttgtctcttatctgttgaattgaaatttcatg 16962106  T
Q  224 ttacatatttttagtcatttaaatattggatataatttatatacactgtcagtataaagnnnnnnnacactgtcgatcaatcatagttgttagatcatta 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  16962107 ttacatatttttagtcatttaaatattggatataatttatatacactgtcagtataaagtttttttacactgtcgatcaatcatagttgttagatcatta 16962206  T
Q  324 aaacgtttgactttaatcataactatttctaaagtcgcacatatgtatttatgagaatgtttattacctgtaagatgaatcctcaatgacatgtttgaga 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16962207 aaacgtttgactttaatcataactatttctaaagtcgcacatatgtatttatgagaatgtttattacctgtaagatgaatcctcaatgacatgtttgaga 16962306  T
Q  424 tatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacacccaccaaatgtctatgccttaa 523  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  16962307 tatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcacagtgtcctaaaacactcaccaaatgtctatgccttaa 16962406  T
Q  524 ataaggta 531  Q
    ||||||||    
T  16962407 ataaggta 16962414  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 368
Target Start/End: Complemental strand, 36639819 - 36639766
Alignment:
Q  316 gatcattaa-aacgtttgactttaatcataactatttctaaagtcgcacatatg 368  Q
    ||||||||| ||||||| | |||||||||||||| |||||||||| ||||||||    
T  36639819 gatcattaagaacgtttcaatttaatcataactacttctaaagtcacacatatg 36639766  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 24827809 - 24827655
Alignment:
Q  31 tatccactaacttttggattgagattattgtccaacaaactgttctcaatcttaatgttgtttccatttatgccaggattaattcctgtatgtaggaatt 130  Q
    |||||||||||||||| ||| ||| |||  || |||||| | ||||||||||| |  ||||| |||  ||| ||||||  || ||||||||||| ||| |    
T  24827809 tatccactaacttttgcattaagactatcatctaacaaaatattctcaatcttgaaattgttgccaaatattccaggagcaactcctgtatgtaagaact 24827710  T
Q  131 gaattcctctagcaatgcctatgatgattgccattctttgttgccacttcagcat 185  Q
    ||| |||||| ||||| |||||| ||||||||||||||||| |||| || |||||    
T  24827709 gaactcctcttgcaattcctatgctgattgccattctttgtggccattttagcat 24827655  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 364
Target Start/End: Original strand, 26815546 - 26815594
Alignment:
Q  317 atcattaaaa-cgtttgactttaatcataactatttctaaagtcgcaca 364  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||||||    
T  26815546 atcattaaaatcgtttgatttttatcataactatttctaaagtcgcaca 26815594  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 256 - 368
Target Start/End: Complemental strand, 30011868 - 30011755
Alignment:
Q  256 taatttatatacactgtcagtataaagnnnnnnnacactgtcgatcaatcatagttgttagatcattaaaac-gtttgactttaatcataactatttcta 354  Q
    ||||| ||||||||||||||| ||||        |||||||| |||||||||| |||| | | ||||||||  ||||||||| ||||||||||| |||||    
T  30011868 taattcatatacactgtcagtttaaacattttttacactgtcaatcaatcatacttgtcataacattaaaaatgtttgacttcaatcataactacttcta 30011769  T
Q  355 aagtcgcacatatg 368  Q
    || || ||||||||    
T  30011768 aaatcacacatatg 30011755  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 525
Target Start/End: Complemental strand, 24827178 - 24827040
Alignment:
Q  387 ttacctgtaagatgaatcctcaatgacatgtttgagatatgctcaaatacaatgaatattgtgcttgtcattttgggttggtcctcataagtaatagcac 486  Q
    ||||||||||| |||  ||| |||||||  |||||||| |  |||| ||||||||| | ||||| ||| | ||  ||  |||||| || ||||||  |||    
T  24827178 ttacctgtaagttgatcccttaatgacacatttgagatgtattcaagtacaatgaagactgtgcatgttacttgaggagggtcctgatgagtaatgacac 24827079  T
Q  487 agtgtcctaaaacacccaccaaatgtctatgccttaaat 525  Q
    ||||||||| ||||| ||||| |||||||||||| ||||    
T  24827078 agtgtcctagaacactcaccatatgtctatgcctcaaat 24827040  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 26762879 - 26762915
Alignment:
Q  323 aaaacgtttgactttaatcataactatttctaaagtc 359  Q
    ||||||||||||||||||||||| || ||||||||||    
T  26762879 aaaacgtttgactttaatcataattacttctaaagtc 26762915  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 359
Target Start/End: Complemental strand, 39560381 - 39560345
Alignment:
Q  323 aaaacgtttgactttaatcataactatttctaaagtc 359  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  39560381 aaaatgtttgactttaatcataactacttctaaagtc 39560345  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 365
Target Start/End: Original strand, 5376311 - 5376362
Alignment:
Q  315 agatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacat 365  Q
    |||||||||||| ||||||||| |||||||||||| ||||||||||||||||    
T  5376311 agatcattaaaaacgtttgactgtaatcataactacttctaaagtcgcacat 5376362  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 35169951 - 35170027
Alignment:
Q  290 acactgtcgatcaatcatagttgttagatcattaaa-acgtttgactttaatcataactatttctaaagtcgcacat 365  Q
    |||||||| ||||||  || | ||||||| |||||| | ||||||||||||||||||||| |||||||||| |||||    
T  35169951 acactgtcaatcaattgtaatcgttagattattaaagatgtttgactttaatcataactacttctaaagtcacacat 35170027  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 32803910 - 32803841
Alignment:
Q  299 atcaatcatagttgttagatcattaaaac-gtttgactttaatcataactatttctaaagtcgcacatat 367  Q
    ||||||||||  ||||||||||| ||||| ||||||||||||| |||| |||||| |||||| |||||||    
T  32803910 atcaatcataactgttagatcataaaaactgtttgactttaattataattatttcaaaagtcacacatat 32803841  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 368
Target Start/End: Complemental strand, 33262655 - 33262607
Alignment:
Q  320 attaaaacgtttgactttaatcataactatttctaaagtcgcacatatg 368  Q
    |||||||  ||||||||| ||||||||||| ||||||||| ||||||||    
T  33262655 attaaaatatttgacttttatcataactatctctaaagtcacacatatg 33262607  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 368
Target Start/End: Complemental strand, 10231916 - 10231862
Alignment:
Q  315 agatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacatatg 368  Q
    |||||||||||| | ||||||||| |||||||||||||||||| || ||||||||    
T  10231916 agatcattaaaatcatttgacttttatcataactatttctaaaatcacacatatg 10231862  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 324 - 358
Target Start/End: Original strand, 32408099 - 32408133
Alignment:
Q  324 aaacgtttgactttaatcataactatttctaaagt 358  Q
    ||||||||||||||||||||||||| |||||||||    
T  32408099 aaacgtttgactttaatcataactacttctaaagt 32408133  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 49364392 - 49364466
Alignment:
Q  294 tgtcgatcaatcatagttgttagatcattaaaacg-tttgactttaatcataactatttctaaagtcgcacatat 367  Q
    |||| |||||||||| || | |||| ||||||| | ||||||||||||| ||| ||||||||||||||| |||||    
T  49364392 tgtccatcaatcataattatcagattattaaaaaggtttgactttaatcgtaattatttctaaagtcgcgcatat 49364466  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 359
Target Start/End: Complemental strand, 1882975 - 1882906
Alignment:
Q  290 acactgtcgatcaatcatagttgttagatcattaaaacgtttgactttaatcataactatttctaaagtc 359  Q
    |||||||| |||| ||||| || | | |||||| |||| ||||| ||||||| |||||||||||||||||    
T  1882975 acactgtcaatcagtcataattatcaaatcattgaaacatttgattttaatcgtaactatttctaaagtc 1882906  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 15867671 - 15867618
Alignment:
Q  299 atcaatcatagttgttagatcattaaaac-gtttgactttaatcataactattt 351  Q
    |||||||||| | || | ||||||||||| ||||||||||||||||||||||||    
T  15867671 atcaatcataatcgtcatatcattaaaactgtttgactttaatcataactattt 15867618  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 367
Target Start/End: Complemental strand, 10997396 - 10997327
Alignment:
Q  299 atcaatcatagttgttagatcattaaaa-cgtttgactttaatcataactatttctaaagtcgcacatat 367  Q
    |||||||||| | |||| |||||||||| |||  ||||||||||||| |||||||||||||  |||||||    
T  10997396 atcaatcataatcgttatatcattaaaaacgtaagactttaatcatatctatttctaaagttacacatat 10997327  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 352
Target Start/End: Complemental strand, 27032080 - 27032040
Alignment:
Q  312 gttagatcattaaaacgtttgactttaatcataactatttc 352  Q
    ||||||||||||||| ||||||||| |||||||| ||||||    
T  27032080 gttagatcattaaaatgtttgacttcaatcataattatttc 27032040  T

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Target: scaffold1396 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1396
Description:

Target: scaffold1396; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 362
Target Start/End: Original strand, 1285 - 1353
Alignment:
Q  294 tgtcgatcaatcatagttgttagatcattaaaacgtttgactttaatcataactatttctaaagtcgca 362  Q
    |||| |||||||||| | || | |||||||||  ||||||| || ||||||||||||||||| ||||||    
T  1285 tgtcaatcaatcataatggtcatatcattaaacagtttgacatttatcataactatttctaatgtcgca 1353  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 359
Target Start/End: Original strand, 31650315 - 31650351
Alignment:
Q  323 aaaacgtttgactttaatcataactatttctaaagtc 359  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  31650315 aaaatgtttgactttaatcataactacttctaaagtc 31650351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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