View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_14 (Length: 488)
Name: NF1351_low_14
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 29 - 488
Target Start/End: Original strand, 47119391 - 47119850
Alignment:
| Q |
29 |
aactggtttgaattttcaactttggtgcttactttgcatattaatgtgatagtgtgatgccttaggactttgacaacttacaatattgaggaatataata |
128 |
Q |
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| T |
47119391 |
aactggtttgaattttcaactttggtgcttactttgcatattaatgtgatagtgtgatgccttaggactttgacaacttacaatattgaggaatataata |
47119490 |
T |
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| Q |
129 |
tgtattgtatgtttaggacttccatttcatcatcagaattagactataagagtagagaaagaaaagaatgtaacactagaattggagatatgttagtact |
228 |
Q |
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| T |
47119491 |
tgtattgtatgtttaggacttccatttcatcatcagaattagactataagagtagagaaagaaaagaatgtaacactagaattggagatatgttagtact |
47119590 |
T |
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| Q |
229 |
ggtggggcatcggttgaagttagaggggatgttaaatttttgttgctcactgtgattagcagttgaatgtgttggcagtggcgtaattgagccgttggag |
328 |
Q |
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| T |
47119591 |
ggtggggcatcggttgaagttagaggggaagttaaatatttgttgctcactgtgattagcagttgaatgtgttggcagtggcgtaattgagccgttggag |
47119690 |
T |
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| Q |
329 |
tgtttggtgtttgcaattttaatatatgcaggtttctacaattggtataaagaactgcattctgtatttgaatttgctgagttattgtaatgtcatattg |
428 |
Q |
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| T |
47119691 |
tgtttggtttttgcaattttaatatatgcaggtttctacaattggtgtaaagaactgcattctgtatttgaatttgctgagttattgtaatgtcatattg |
47119790 |
T |
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| Q |
429 |
atttagttagtgaaggagggacaagcacgaataatgcgggaaaaggaaaaatcgagctaa |
488 |
Q |
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| T |
47119791 |
atttagttagtgaaggagggacaagcacgaataatgcgggaaaaggaaaaatcgtgctaa |
47119850 |
T |
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