View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_16 (Length: 454)

Name: NF1351_low_16
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_16
NF1351_low_16
[»] chr7 (2 HSPs)
chr7 (28-444)||(7237935-7238352)
chr7 (248-324)||(1826295-1826372)
[»] chr8 (5 HSPs)
chr8 (32-128)||(22531392-22531484)
chr8 (32-128)||(22536077-22536169)
chr8 (32-119)||(25993998-25994081)
chr8 (213-287)||(29565815-29565889)
chr8 (248-281)||(33994999-33995032)
[»] chr5 (1 HSPs)
chr5 (32-125)||(13191823-13191912)
[»] chr1 (2 HSPs)
chr1 (32-125)||(30190900-30190989)
chr1 (28-125)||(31991729-31991822)
[»] scaffold0097 (1 HSPs)
scaffold0097 (32-128)||(21529-21621)
[»] chr2 (2 HSPs)
chr2 (32-128)||(20717692-20717784)
chr2 (241-282)||(17334526-17334567)
[»] chr6 (1 HSPs)
chr6 (37-128)||(33091079-33091166)
[»] chr3 (2 HSPs)
chr3 (34-125)||(20983186-20983273)
chr3 (38-125)||(49368481-49368564)


Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 28 - 444
Target Start/End: Original strand, 7237935 - 7238352
Alignment:
Q  28 catttacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcctt 126  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||    
T  7237935 catttacatcccatcaatccaaacaatgaaattttattatataccatcacattccattccattccattccactacaacccatcaatccaaacagagcctt 7238034  T
Q  127 agaccggtgacgctcgttacctttgtgcttgtgaccgtcaagatctcttggcgtcttctttcctcctatttttggcgtctaacacccaagtacctgaaat 226  Q
    |||| ||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  7238035 agactggtgacgctcgttacctttgtgcttgtgaccatcaagacctcttggcgtcttctttcctcccatttttggcgtctaacacccaagtacctgaaat 7238134  T
Q  227 gtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaatt 326  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238135 gtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaaataagctttttagataatgtactttgtgtgttatcaatt 7238234  T
Q  327 gcacgcctgtatattcatatcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagtt 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238235 gcacgcctgtatattcatatcttatactcattacttgcactcttatttaccacaattcgttcataaaggcacacatagagttacacaacctttaatagtt 7238334  T
Q  427 gcactccatctattcatc 444  Q
    ||||||||||||||||||    
T  7238335 gcactccatctattcatc 7238352  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 1826372 - 1826295
Alignment:
Q  248 accatgcaaaacacgacaaatgactctaaaacaaacgaaaat-aagctttttagataatgtactttgtgtgttatcaa 324  Q
    ||||||||| |||| | || ||||||||||||||| | | || ||||| |||||| |||||| |||||||||||||||    
T  1826372 accatgcaagacacaataattgactctaaaacaaatggatatcaagctatttagacaatgtattttgtgtgttatcaa 1826295  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 22531392 - 22531484
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagccttag 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22531392 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagccttag 22531484  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 22536077 - 22536169
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagccttag 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  22536077 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagccttag 22536169  T

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Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 25993998 - 25994081
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaaca 119  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| |||||    
T  25993998 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaaca 25994081  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 287
Target Start/End: Complemental strand, 29565889 - 29565815
Alignment:
Q  213 caagtacctgaaatgtaaacaaaacatcagcagacaccatgcaaaacacgacaaatgactctaaaacaaacgaaa 287  Q
    |||||||||||||||||||||||||| || || |||||||| ||||| |||||||||||||||||||||| ||||    
T  29565889 caagtacctgaaatgtaaacaaaacaccaacatacaccatgtaaaacgcgacaaatgactctaaaacaaatgaaa 29565815  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 33994999 - 33995032
Alignment:
Q  248 accatgcaaaacacgacaaatgactctaaaacaa 281  Q
    |||||||||||||||||||||| |||||||||||    
T  33994999 accatgcaaaacacgacaaatggctctaaaacaa 33995032  T

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Target: chr5 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 13191823 - 13191912
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcct 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| |||||    
T  13191823 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagcct 13191912  T

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Target: chr1 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 30190900 - 30190989
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcct 125  Q
    |||||||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| |||||    
T  30190900 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagcct 30190989  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 31991729 - 31991822
Alignment:
Q  28 catttacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcct 125  Q
    |||||||||| ||||||||||| |||||||||||||| | ||  ||| ||||     |||||||||||||||||||||||||||||| |||||||||||    
T  31991729 catttacatctcatcaatccaaacaatggaattttataaaatgacattacat-----tccattccattccactacaacccatcaatccaaacagagcct 31991822  T

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Target: scaffold0097 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 21529 - 21621
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagccttag 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  21529 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattctattccactacaacccatcaatccaaacatagccttag 21621  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 20717692 - 20717784
Alignment:
Q  32 tacatcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagccttag 128  Q
    |||||||||||||||||| |||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||| ||||| ||||||||    
T  20717692 tacatcccatcaatccaaacaatggaattttattatataccatc-----tcattccattctattccactacaacccatcaatccaaacatagccttag 20717784  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 282
Target Start/End: Original strand, 17334526 - 17334567
Alignment:
Q  241 agcagacaccatgcaaaacacgacaaatgactctaaaacaaa 282  Q
    |||||| |||||||||||||||||||||||| | ||||||||    
T  17334526 agcagataccatgcaaaacacgacaaatgaccccaaaacaaa 17334567  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 37 - 128
Target Start/End: Complemental strand, 33091166 - 33091079
Alignment:
Q  37 cccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagccttag 128  Q
    ||||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  33091166 cccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagccttag 33091079  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 125
Target Start/End: Complemental strand, 20983273 - 20983186
Alignment:
Q  34 catcccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcct 125  Q
    |||||||||||||||| |||||||||||||||||||||||||     ||||||||||| |||||||||||||||||||||| ||||| |||||    
T  20983273 catcccatcaatccaaacaatggaattttattatataccatc-----tcattccattctattccactacaacccatcaatccaaacatagcct 20983186  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 38 - 125
Target Start/End: Original strand, 49368481 - 49368564
Alignment:
Q  38 ccatcaatccaa-caatggaattttattatataccatcacatctcattccattccattccactacaacccatcaatctaaacagagcct 125  Q
    |||||||||||| |||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||| ||||| |||||    
T  49368481 ccatcaatccaaacaatggaattttattatataccatc-----tcattccattccattccactacaacccatcaatccaaacatagcct 49368564  T

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