View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_18 (Length: 422)
Name: NF1351_low_18
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 10 - 389
Target Start/End: Original strand, 3542732 - 3543111
Alignment:
| Q |
10 |
atatgaatatcgctaaatagagtgttattagtcttcgcaagtaataaaccataatatctagtaaaaacttcaaataattttacaccacaacaagcaatac |
109 |
Q |
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| T |
3542732 |
atatgaatatcgctaaatagagtgttattagtcttcgcaagtaataaaccataatatctagtaaaaacttcaaataattttacaccacaacaagcaatac |
3542831 |
T |
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| Q |
110 |
aaattataactactgcaatgcaagcaatgataacaatcacttatgaaggtgtgcaatttgaaacaccaacatggattgaatttagcagtagttagaagag |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542832 |
aaattataactactgcaatgcaagcaatgataacaatcacttatgaaggtgtacaatttgaaacaccaacatggattgaatttagcagtagttagaagag |
3542931 |
T |
|
| Q |
210 |
gttagactcctacaacatgtcaaactagagatcaaattttgactaagaaagatattcacatctagtgttcgaacaggttcaataagattaactcactcga |
309 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3542932 |
gttagacttctacaacatgtcaaactagagatcaaattttgactaagaaagatattcacatatagtgttcgaacaggttcaataagattaactcactcga |
3543031 |
T |
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| Q |
310 |
aggaaacttataagagctagtcacatttaatatccgacaatgctccaataagatttacctcttcataaatcttcaaccac |
389 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3543032 |
aggaaacttataagagctagtcacatttaatatccgacaatgctccaataagatttacctcttcataaatcttcaaccac |
3543111 |
T |
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