View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_19 (Length: 412)
Name: NF1351_low_19
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 30 - 412
Target Start/End: Original strand, 55577691 - 55578073
Alignment:
| Q |
30 |
gattcacaatcttacagtcaaatcttggaggacataattgctagcaactcaaagttgggtcgacgtgataaaattgaagatccaagaaccgatcattggc |
129 |
Q |
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| T |
55577691 |
gattcacaatcttacagtcaaatcttggaggacataattgctagcaactcaaagttgggtcgacgtgataaaattgaagatccaagaaccgatcattggc |
55577790 |
T |
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| Q |
130 |
ctcgacagatcgtgctttgttacaccctagaggagatgaaaaaggtttacaatgctattggctctgattggagggccattatggctgtatcttggaaata |
229 |
Q |
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| T |
55577791 |
ctcgacagatcgtgctttgttacaccctagaggagatgaaaaaggtttacaatgctattggctctgattggagggccattatggctgtatcttggaaata |
55577890 |
T |
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| Q |
230 |
cccctcagctatgacagacaaaatactggataggatggacgactttcagcaaagggttgggattttggatcaccatcgtgatccatactggcattgaaca |
329 |
Q |
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| T |
55577891 |
cccctcagctatgacagacaaaatactggataggatggacgactttcagcaaagggttgggattttggatcaccatcgtgatccatactggcattgaaca |
55577990 |
T |
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| Q |
330 |
caagattgtggccttgcataaaactatagtactgcttagcttcttttcttttcaatctggggtttattactttgttttggact |
412 |
Q |
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| T |
55577991 |
caagattgtggccttgcataaaactatagtactgcttagcttcttttcttttcaatttggggtttattactttgttttggact |
55578073 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 117
Target Start/End: Original strand, 4373028 - 4373071
Alignment:
| Q |
74 |
caactcaaagttgggtcgacgtgataaaattgaagatccaagaa |
117 |
Q |
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| T |
4373028 |
caactcaaagttgggccgacttgataaaattgaacatccaagaa |
4373071 |
T |
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