View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_20 (Length: 407)
Name: NF1351_low_20
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 28 - 220
Target Start/End: Complemental strand, 36389270 - 36389077
Alignment:
| Q |
28 |
cattacccaatcgtgtaatacacgtttgtttgttatgtttcttgtttactgttaatattgtatctttgttgacttttgctcttctctagggtacgtcttg |
127 |
Q |
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| T |
36389270 |
cattacccaattgtgtaattcaggtttgtttgttctgtttcttgtttactgttaatattgtatctttgttgacttttgctcttctctagggtatgtcttg |
36389171 |
T |
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| Q |
128 |
tgcttgagagagggtattgtggtagtaatataattcattttggttttttg-nnnnnnngatttaacttcattgactacataggatttgacctaa |
220 |
Q |
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| T |
36389170 |
tgcttaagagagggtattgtggtagtaatataattcattttggttttttgaaaaaaaagatttaacttcattgactacatagggtttgagctaa |
36389077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 280 - 396
Target Start/End: Complemental strand, 36388669 - 36388553
Alignment:
| Q |
280 |
atcaggccactcgagtcatactccagatatcccatcatgagtgagaagcggtgtattaaaagtcctacattggattgaatgagatatgattttcgaactc |
379 |
Q |
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| T |
36388669 |
atcaggccactcgaggtatgctccagatatccaatcatgggtgagaaggggtgtattaaaagtcctacattggattgaatgagatatggttttcgaactc |
36388570 |
T |
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| Q |
380 |
cttcaagtgtgcttcat |
396 |
Q |
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| T |
36388569 |
cttcaagtgtgcttcat |
36388553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 282
Target Start/End: Complemental strand, 36388994 - 36388959
Alignment:
| Q |
247 |
aagaataaagtttaagagctaataagtattttaatc |
282 |
Q |
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| T |
36388994 |
aagaataaagtttaagagctaataagtattttaatc |
36388959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 63 - 169
Target Start/End: Complemental strand, 18668237 - 18668131
Alignment:
| Q |
63 |
tgtttcttgtttactgttaatattgtatctttgttgacttttgctcttctctagggtacgtcttgtgcttgagagagggtattgtggtagtaatataatt |
162 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| | || | |||||||||||||||||| |
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| T |
18668237 |
tgtttcttgttttctgttaatattgtatctttgttgacttttgctcttctctagagtacatcttgtgcttgaaaaagtacagtgtggtagtaatataatt |
18668138 |
T |
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| Q |
163 |
cattttg |
169 |
Q |
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||||||| |
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| T |
18668137 |
cattttg |
18668131 |
T |
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