View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_21 (Length: 407)
Name: NF1351_low_21
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 3 - 378
Target Start/End: Complemental strand, 19788274 - 19787899
Alignment:
| Q |
3 |
aaagtgtgtatatcaatgtcgatgtttctctaagttttgggtgtatcagcgttgaaatatttctcaaggtacttcccatagtcgctgagtgctacatttt |
102 |
Q |
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| T |
19788274 |
aaagtgtgtataaaaatgtcgatgtttctctaagctttcggtgtatcagcgttaaaatatttctcaaggta-ttcccatagtcgctgagttctacattta |
19788176 |
T |
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| Q |
103 |
ggtccttttgtgtactttccatttgcccaactggagcaattttaagtaaactagccttcagttcagctcaagcaggacagatatataatcaagcacataa |
202 |
Q |
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| T |
19788175 |
ggtccttttgtgtactttccatttgccaaactggagcaattttaagtaaactagccttcagttcagctcaatcaggacagaattataatcaagcacataa |
19788076 |
T |
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| Q |
203 |
tcagtgtcaaaacaca-ctcaatttcctgtctgatcagatcaatcatctctcgaggcttagaactggataacttgtgcttcttagtaactttatcaaaag |
301 |
Q |
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| T |
19788075 |
tcagtgtcaaaacacaactcaatttcctgtctgattggatcaatcatctcttgaggcttggaactggataacttttgcttcttagtaactttatcaaaag |
19787976 |
T |
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| Q |
302 |
cgtctttaacagaacttagcttcacgatgagtattgacggtaactacagtttgtaaggccgtaggctaagatacact |
378 |
Q |
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| T |
19787975 |
catctttaacagaacttagcttcacgatgagtattgactgtaactacagtttgtaaggccataagttaagatacact |
19787899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 219 - 373
Target Start/End: Complemental strand, 28172406 - 28172252
Alignment:
| Q |
219 |
ctcaatttcctgtctgatcagatcaatcatctctcgaggcttagaactggataacttgtgcttcttagtaactttatcaaaagcgtctttaacagaactt |
318 |
Q |
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| T |
28172406 |
ctcaatttcatgactaatctgatcaatcatctcttgagccttagaactggataacttttgcttctttgtaactcggtcaaaggcatctttaacagaactt |
28172307 |
T |
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| Q |
319 |
agcttcacgatgagtattgacggtaactacagtttgtaaggccgtaggctaagat |
373 |
Q |
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| T |
28172306 |
agctccatgatgagtattaagcgtacctaccgtctgtaaggctgtaagctaagat |
28172252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 163
Target Start/End: Complemental strand, 28172636 - 28172479
Alignment:
| Q |
3 |
aaagtgtgtatatcaatgtcgatgtttctctaagttttgggtgtatcagcgttgaaatatttctcaaggtacttcccatagtcgctgagtgctacatttt |
102 |
Q |
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| T |
28172636 |
aaagtgtgtatatcaaagttggtgtttctgtaagcttttgatatatcaggg---aaacttttctcaagatgcttcccatacttgctgagtgctacattta |
28172540 |
T |
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| Q |
103 |
ggtccttttgtgtactttccatttgcccaactggagcaattttaagtaaactagccttcag |
163 |
Q |
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| T |
28172539 |
gctccttctgtgtactttccatttggccaattggggaaattttaagtaaactggccttcag |
28172479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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