View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_23 (Length: 371)
Name: NF1351_low_23
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 100 - 360
Target Start/End: Complemental strand, 39341498 - 39341238
Alignment:
| Q |
100 |
aacctgtgcaccatattttaggtggtggaaaatgtatgtcaatgacaattctagtgaatttcctgtaaaatctatcatattggcttcagcttttaaatct |
199 |
Q |
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| T |
39341498 |
aacctgtgcaccatattttaggtggtggaaaatgtatgtcaatgacaattctagtgaatttcctgtaaaatctatcatattggcttcagcttttaaatct |
39341399 |
T |
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| Q |
200 |
gttttcttttttatactttgaatgacgtagctgctgatgtcttgttatggagggacaagaagatctctgctgctgttttaaccgctgcaacaactatatg |
299 |
Q |
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| T |
39341398 |
gttctcttttttatactttgaatgacgtagctgctgatgtcttgttatggagggacaagaagatctctgctgctgttttaaccgctgcaacaactatatg |
39341299 |
T |
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| Q |
300 |
gctgctttttgaatggcttaattataatttcctatctcttctatgccttgctcttgttctt |
360 |
Q |
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| T |
39341298 |
gctgctttttgaatggcttaattataatttcctatctcttctatgccttgctcttgttctt |
39341238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 29280230 - 29280303
Alignment:
| Q |
29 |
atgtgttggtgcaagaactatagttagtagcatagtatcaatatcatatgcatgaaagatgttaatgagagaac |
102 |
Q |
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| T |
29280230 |
atgtgttagtccaagaactatagttagtagcatagtatcaatatcatatgcatgaaagatgttaatgaaagaac |
29280303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 329
Target Start/End: Complemental strand, 17070581 - 17070479
Alignment:
| Q |
227 |
tagctgctgatgtcttgttatggagggacaagaagatctctgctgctgttttaaccgctgcaacaactatatggctgctttttgaatggcttaattataa |
326 |
Q |
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| T |
17070581 |
tagctgcggatgttttgttatggaggaacaagacgatttctgctagttttttaactggtgcaacaattgtatgggtgctatttgaatggctcaattataa |
17070482 |
T |
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| Q |
327 |
ttt |
329 |
Q |
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||| |
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| T |
17070481 |
ttt |
17070479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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