View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_3 (Length: 688)

Name: NF1351_low_3
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_3
NF1351_low_3
[»] chr5 (12 HSPs)
chr5 (13-688)||(38299617-38300290)
chr5 (13-118)||(38304395-38304500)
chr5 (13-134)||(38292588-38292708)
chr5 (192-322)||(38292412-38292542)
chr5 (506-580)||(17476196-17476271)
chr5 (352-396)||(41048648-41048692)
chr5 (352-387)||(15238984-15239019)
chr5 (352-431)||(17476194-17476268)
chr5 (602-631)||(38292381-38292410)
chr5 (352-380)||(18936522-18936550)
chr5 (652-684)||(28285340-28285372)
chr5 (652-688)||(30109265-30109301)
[»] chr2 (14 HSPs)
chr2 (350-440)||(37828444-37828529)
chr2 (499-577)||(37828446-37828525)
chr2 (352-461)||(4865633-4865739)
chr2 (500-549)||(4865485-4865534)
chr2 (352-385)||(29667793-29667826)
chr2 (499-543)||(19478722-19478766)
chr2 (498-578)||(37828700-37828782)
chr2 (356-396)||(53764-53804)
chr2 (652-684)||(1435151-1435183)
chr2 (353-396)||(25557836-25557880)
chr2 (652-684)||(26773093-26773125)
chr2 (652-684)||(37480163-37480195)
chr2 (652-684)||(37755927-37755959)
chr2 (652-684)||(42602642-42602674)
[»] chr1 (7 HSPs)
chr1 (498-577)||(51249167-51249248)
chr1 (349-396)||(42175296-42175343)
chr1 (352-436)||(27631000-27631080)
chr1 (355-396)||(29861423-29861464)
chr1 (501-574)||(29861423-29861497)
chr1 (652-684)||(6122882-6122914)
chr1 (652-684)||(16893482-16893514)
[»] chr8 (10 HSPs)
chr8 (501-577)||(29795754-29795832)
chr8 (352-387)||(19923494-19923529)
chr8 (499-577)||(27187219-27187298)
chr8 (654-688)||(29431095-29431129)
chr8 (513-577)||(13706209-13706274)
chr8 (500-578)||(27559075-27559155)
chr8 (506-578)||(1410712-1410784)
chr8 (652-684)||(11819864-11819896)
chr8 (652-684)||(28783148-28783180)
chr8 (652-684)||(44780070-44780102)
[»] chr7 (11 HSPs)
chr7 (353-396)||(2169279-2169322)
chr7 (349-396)||(23475744-23475791)
chr7 (349-396)||(23534157-23534204)
chr7 (352-392)||(23443335-23443375)
chr7 (652-688)||(25132335-25132371)
chr7 (352-398)||(23474929-23474975)
chr7 (351-380)||(1505542-1505571)
chr7 (352-436)||(23533269-23533349)
chr7 (652-684)||(11720916-11720948)
chr7 (352-392)||(23457459-23457499)
chr7 (652-684)||(25590699-25590731)
[»] chr4 (10 HSPs)
chr4 (51-104)||(18745508-18745561)
chr4 (652-684)||(8030160-8030192)
chr4 (522-579)||(12828598-12828657)
chr4 (554-582)||(20822075-20822103)
chr4 (352-396)||(26310410-26310454)
chr4 (416-468)||(27940431-27940483)
chr4 (652-684)||(28635784-28635816)
chr4 (652-688)||(37274415-37274451)
chr4 (652-684)||(51954202-51954234)
chr4 (352-392)||(52073270-52073310)
[»] chr3 (7 HSPs)
chr3 (355-396)||(30259878-30259919)
chr3 (652-688)||(10445095-10445131)
chr3 (352-396)||(38421373-38421417)
chr3 (351-384)||(25858058-25858091)
chr3 (652-684)||(8075083-8075115)
chr3 (652-684)||(10499065-10499097)
chr3 (652-684)||(51903834-51903866)
[»] chr6 (10 HSPs)
chr6 (498-577)||(5449485-5449568)
chr6 (498-544)||(34397003-34397048)
chr6 (520-578)||(1706589-1706647)
chr6 (352-396)||(4974691-4974735)
chr6 (498-559)||(5451065-5451128)
chr6 (652-688)||(6385946-6385982)
chr6 (652-684)||(8597703-8597735)
chr6 (652-684)||(20213129-20213161)
chr6 (652-684)||(22107152-22107184)
chr6 (652-684)||(31622947-31622979)
[»] scaffold0260 (1 HSPs)
scaffold0260 (352-386)||(20559-20593)
[»] scaffold0122 (1 HSPs)
scaffold0122 (652-684)||(6878-6910)


Alignment Details
Target: chr5 (Bit Score: 584; Significance: 0; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 13 - 688
Target Start/End: Complemental strand, 38300290 - 38299617
Alignment:
Q  13 atactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgacaa 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||    
T  38300290 atactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggcttaacaa 38300191  T
Q  113 tatacctaactatacataaaaaggattattcttgagtcagcttctctacttgattggattattccaatactagtttttcaataaaataagtatttgcagg 212  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38300190 tatacc-aactatacagaaaaaggattattcttgagtcagcttctctacttgattggattattccaatactagtttttcaataaaataagtatttgcagg 38300092  T
Q  213 aatcttgcagtttatgctagggtttattttcattatgtttgaaaattttgtagcgattctgcagctatcagattcattatatagtaagattgattaagtt 312  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  38300091 aatcttgcagtt-atgctagggtttattttcattatgtttgaaaattttgtagcgattctgcagctatcagattcattatatagtaagattgattaaatt 38299993  T
Q  313 gatttatccgaaacgattgtctttgaaccattacaattggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaat 412  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38299992 gatttatccgaaatgattgtctttgaaccattacaattggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaat 38299893  T
Q  413 acgcccacgtgagttaacttacgtaggtgttaaaccaacgtgacttaagcgacgttcagtacccaactcacgcagggtataactcagcgtgaattaactc 512  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||| ||||||||||||||| |||||||    
T  38299892 acgcccacgtgagttaacttacgtaggttttaaaccaacgtgacttaagtgacgttcaatatccaactcacgcaggttataactcagcgtgagttaactc 38299793  T
Q  513 acgcgggggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttcttacaattgttttgcggaagaacaattgaaagcca 612  Q
    ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  38299792 acgcgggagtattttagtcagtttgtatgggagtgaacgtcttttttgggagaagagcaattttcttacaattgatttgcggaagcacaattgaaagcca 38299693  T
Q  613 aaacacagcacaatctctacaatatctttattcttttactttttgaagaagctaaattagcccacgcaaattagca 688  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38299692 aaacacagcacaatctctacaatatctttgttcttttactttttgaagaagctaaattagcccacgcaaattagca 38299617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 13 - 118
Target Start/End: Complemental strand, 38304500 - 38304395
Alignment:
Q  13 atactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgacaa 112  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  38304500 atactaaagggcgtgtaccttgggagaagaagccgaatgaaataaacataaatgattattctttatcatctttcataaatgaagatggatggcttaacaa 38304401  T
Q  113 tatacc 118  Q
    ||||||    
T  38304400 tatacc 38304395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 13 - 134
Target Start/End: Complemental strand, 38292708 - 38292588
Alignment:
Q  13 atactaaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatggatgggttgacaa 112  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||  |||    
T  38292708 atactcaagggcgtgtaccatgggagaagaagccgaatgaaataaatataaatgattattctttatcatctttcataaatgaagatagatggctttccaa 38292609  T
Q  113 tatacctaactatacataaaaa 134  Q
     ||||| | |||||||||||||    
T  38292608 catacc-acctatacataaaaa 38292588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 192 - 322
Target Start/End: Complemental strand, 38292542 - 38292412
Alignment:
Q  192 aataaaataagtatttgcaggaatcttgcagtttatgctagggtttattttc-attatgtttgaaaattttgtagcgattctgcagctatcagattcatt 290  Q
    |||||||||||| | || ||||||||||||||| |||||||||||||||||  ||||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  38292542 aataaaataagtgtatgtaggaatcttgcagtt-atgctagggtttatttttgattatgtttcaaacttttgtagcaattctgcacctatcagattcatt 38292444  T
Q  291 atatagtaagattgattaagttgatttatccg 322  Q
    ||||| ||||||||||||||||||||||||||    
T  38292443 atatactaagattgattaagttgatttatccg 38292412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 506 - 580
Target Start/End: Original strand, 17476196 - 17476271
Alignment:
Q  506 ttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttctta 580  Q
    |||||||||| || |||||||| ||||||||||||||||| ||| || |||| ||||||||||| |||||||||||    
T  17476196 ttaactcacgtggaggtattttggtcagtttgtatgagagcgaacgttttttgttgggagaagaacaattttctta 17476271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 41048648 - 41048692
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||    
T  41048648 gaaaattgctcttctcccaacaaaaaacgcacactcccatacaaa 41048692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 15239019 - 15238984
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactc 387  Q
    ||||||||||||||||||||||||||||||||||||    
T  15239019 gaaaattgctcttctcccaacaaaaaacgctcactc 15238984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 431
Target Start/End: Complemental strand, 17476268 - 17476194
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaatacgcccacgtgagttaact 431  Q
    |||||||| |||||||||||||||||||| || ||| |||||     ||||||||||||||||  |||||||||||||||    
T  17476268 gaaaattgttcttctcccaacaaaaaacgttcgctctcatac-----aaactgaccaaaatacctccacgtgagttaact 17476194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 602 - 631
Target Start/End: Complemental strand, 38292410 - 38292381
Alignment:
Q  602 attgaaagccaaaacacagcacaatctcta 631  Q
    ||||||||||||||||||||||||||||||    
T  38292410 attgaaagccaaaacacagcacaatctcta 38292381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 380
Target Start/End: Original strand, 18936522 - 18936550
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacg 380  Q
    |||||||||||||||||||||||||||||    
T  18936522 gaaaattgctcttctcccaacaaaaaacg 18936550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 28285372 - 28285340
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  28285372 tttttgaagaagctaaattagcccacccaaatt 28285340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 688
Target Start/End: Original strand, 30109265 - 30109301
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaattagca 688  Q
    ||||||||||||||||||||||||||  |||||||||    
T  30109265 tttttgaagaagctaaattagcccacctaaattagca 30109301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 350 - 440
Target Start/End: Original strand, 37828444 - 37828529
Alignment:
Q  350 tggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaatacgcccacgtgagttaacttacgtaggt 440  Q
    ||||||||||||||||||||||||||||||| ||||||||||||     |||||||||||||||| | | |||||||||||| ||| ||||    
T  37828444 tggaaaattgctcttctcccaacaaaaaacgatcactcacatac-----aaactgaccaaaataccctcgcgtgagttaactcacgcaggt 37828529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 499 - 577
Target Start/End: Complemental strand, 37828525 - 37828446
Alignment:
Q  499 gcgtgaattaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 577  Q
    |||||| |||||||||||| ||||||||| ||||||||||||| ||||||  || |||| ||||||||||||||||||||    
T  37828525 gcgtgagttaactcacgcgagggtattttggtcagtttgtatgtgagtgatcgttttttgttgggagaagagcaattttc 37828446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 352 - 461
Target Start/End: Complemental strand, 4865739 - 4865633
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaata-cgcccacgtgagttaacttacgtaggtgttaaa-cca 449  Q
    |||||||||||| |||||||||||||| | |||||| |||||     ||||||||||||||| | ||||| ||| |||| ||||  |||||||||| |||    
T  4865739 gaaaattgctctcctcccaacaaaaaatgttcactcccatac-----aaactgaccaaaataccacccacatgacttaagttacacaggtgttaaatcca 4865645  T
Q  450 acgtgacttaag 461  Q
    ||||||||||||    
T  4865644 acgtgacttaag 4865633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 500 - 549
Target Start/End: Complemental strand, 4865534 - 4865485
Alignment:
Q  500 cgtgaattaactcacgcgggggtattttagtcagtttgtatgagagtgaa 549  Q
    ||||| |||||||||| ||||||||||| || ||||||||||||||||||    
T  4865534 cgtgagttaactcacgtgggggtattttggtaagtttgtatgagagtgaa 4865485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 385
Target Start/End: Complemental strand, 29667826 - 29667793
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcac 385  Q
    ||||||||||||||||||||||||||||||||||    
T  29667826 gaaaattgctcttctcccaacaaaaaacgctcac 29667793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 499 - 543
Target Start/End: Complemental strand, 19478766 - 19478722
Alignment:
Q  499 gcgtgaattaactcacgcgggggtattttagtcagtttgtatgag 543  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||    
T  19478766 gcgtgacttaactcacgttggggtattttagtcagtttgtatgag 19478722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 498 - 578
Target Start/End: Original strand, 37828700 - 37828782
Alignment:
Q  498 agcgtgaattaactcacgcggggg-tattttagtcagtttgtatgagagtgaaagtctttttt-gggagaagagcaattttct 578  Q
    ||||||| |||||||||| ||||| |||||| || |||||||||  ||||||| || |||| | |||||||||||||||||||    
T  37828700 agcgtgagttaactcacgtggggggtattttggtaagtttgtataggagtgaatgttttttgtcgggagaagagcaattttct 37828782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 396
Target Start/End: Original strand, 53764 - 53804
Alignment:
Q  356 attgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||| ||||||  |||||||||||||||||    
T  53764 attgctcttctcccatcaaaaattgctcactcacatacaaa 53804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 1435183 - 1435151
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  1435183 tttttgaagaagctaaattagcccacccaaatt 1435151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 396
Target Start/End: Original strand, 25557836 - 25557880
Alignment:
Q  353 aaaattgctcttctcccaac-aaaaaacgctcactcacatacaaa 396  Q
    |||||||||||||| ||||| ||||||||||||||| ||||||||    
T  25557836 aaaattgctcttcttccaacaaaaaaacgctcactcccatacaaa 25557880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 26773093 - 26773125
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  26773093 tttttgaagaagctaaattagcccacccaaatt 26773125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 37480195 - 37480163
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  37480195 tttttgaagaagctaaattagcccacccaaatt 37480163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 37755927 - 37755959
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  37755927 tttttgaagaagctaaattagcccactcaaatt 37755959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 42602674 - 42602642
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  42602674 tttttgaagaagctaaattagcccacccaaatt 42602642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 498 - 577
Target Start/End: Complemental strand, 51249248 - 51249167
Alignment:
Q  498 agcgtgaattaactcacgcggggg-tattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 577  Q
    ||||||| ||||||||||||  || ||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||    
T  51249248 agcgtgagttaactcacgcgaaggatattttagtcagtttatatgagagtgcacgtcttttgttgggagaagagcaattttc 51249167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 42175343 - 42175296
Alignment:
Q  349 ttggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  42175343 ttggaaaattgctcttctcccaacaaaaaacactcactcccatacaaa 42175296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 27631000 - 27631080
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaatac-gcccacgtgagttaacttacgt 436  Q
    |||||| ||||||||||||||||||||||||||||| ||||     ||||||||| |||| ||  |||||||||||||||| ||||    
T  27631000 gaaaatagctcttctcccaacaaaaaacgctcactcccata-----taaactgactaaaacacatcccacgtgagttaactcacgt 27631080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 29861423 - 29861464
Alignment:
Q  355 aattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    |||||||||| |||||||||||||||||||||| ||||||||    
T  29861423 aattgctcttatcccaacaaaaaacgctcactctcatacaaa 29861464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 501 - 574
Target Start/End: Complemental strand, 29861497 - 29861423
Alignment:
Q  501 gtgaattaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaatt 574  Q
    |||| ||||||||||||| |||||||| |  |||||||||||||||||  || |||| |||||| ||||||||||    
T  29861497 gtgagttaactcacgcggaggtattttggctagtttgtatgagagtgagcgttttttgttgggataagagcaatt 29861423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 6122914 - 6122882
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  6122914 tttttgaagaagctaaattagcccacccaaatt 6122882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 16893514 - 16893482
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  16893514 tttttgaagaagctaaattagcccactcaaatt 16893482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 501 - 577
Target Start/End: Complemental strand, 29795832 - 29795754
Alignment:
Q  501 gtgaattaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt--ttgggagaagagcaattttc 577  Q
    |||| ||||||||||||| |||||||| |||||||||||||||||| || || ||||  ||| ||||||||||||||||    
T  29795832 gtgagttaactcacgcggaggtattttggtcagtttgtatgagagtaaacgtttttttgttgagagaagagcaattttc 29795754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 19923529 - 19923494
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactc 387  Q
    ||||||||||||||||||||||||||| ||||||||    
T  19923529 gaaaattgctcttctcccaacaaaaaaagctcactc 19923494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 499 - 577
Target Start/End: Complemental strand, 27187298 - 27187219
Alignment:
Q  499 gcgtgaattaactcacgcgggggtattttagtcagtttgtatgagagtga-aagtcttttttgggagaagagcaattttc 577  Q
    |||||| |||| |||||| |||||||||| ||||||||||||| ||||||  | | |||| |||||||||| ||||||||    
T  27187298 gcgtgacttaaatcacgctggggtatttttgtcagtttgtatgggagtgagtaattttttatgggagaagaccaattttc 27187219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 654 - 688
Target Start/End: Complemental strand, 29431129 - 29431095
Alignment:
Q  654 tttgaagaagctaaattagcccacgcaaattagca 688  Q
    |||||||||||||||||||||||| ||||||||||    
T  29431129 tttgaagaagctaaattagcccactcaaattagca 29431095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 577
Target Start/End: Original strand, 13706209 - 13706274
Alignment:
Q  513 acgcgggggtattttagtcagtttgtatgagagtgaaagtctttt-ttgggagaagagcaattttc 577  Q
    ||||||||||||||| || |||||||||| ||||||| || ||||  ||| |||||||||||||||    
T  13706209 acgcgggggtattttggttagtttgtatgggagtgaacgttttttaatggtagaagagcaattttc 13706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 500 - 578
Target Start/End: Complemental strand, 27559155 - 27559075
Alignment:
Q  500 cgtgaattaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtctttt--ttgggagaagagcaattttct 578  Q
    ||||||||||||||||| ||| ||||||| ||||||||  || | ||||| || ||||  |||||||||||||| ||||||    
T  27559155 cgtgaattaactcacgctgggatattttaatcagtttggttgggtgtgaacgtttttttgttgggagaagagcagttttct 27559075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 506 - 578
Target Start/End: Original strand, 1410712 - 1410784
Alignment:
Q  506 ttaactcacgcgggggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttct 578  Q
    |||||||||| || ||||||||  | ||||| ||||  |||||  || |||||||||||||||||||||||||    
T  1410712 ttaactcacgtggaggtattttgattagtttatatggcagtgagtgttttttttgggagaagagcaattttct 1410784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 11819896 - 11819864
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  11819896 tttttgaagaagctaaattagcccacccaaatt 11819864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 28783180 - 28783148
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  28783180 tttttgaagaagctaaattagcccacccaaatt 28783148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 44780070 - 44780102
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  44780070 tttttgaagaagctaaattagcccacccaaatt 44780102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 396
Target Start/End: Complemental strand, 2169322 - 2169279
Alignment:
Q  353 aaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  2169322 aaaattgctcttctcccaacaaaaaacgctcactcccatacaaa 2169279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 23475791 - 23475744
Alignment:
Q  349 ttggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  23475791 ttggaaaattgctcttctcccaacaaaaaatgctcactctcatacaaa 23475744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 349 - 396
Target Start/End: Complemental strand, 23534204 - 23534157
Alignment:
Q  349 ttggaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||    
T  23534204 ttggaaaattgctcttctcccaacaaaaaatgctcactctcatacaaa 23534157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 23443335 - 23443375
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacata 392  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  23443335 gaaaattgttcttctcccaacaaaaaacgctcactcccata 23443375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 688
Target Start/End: Original strand, 25132335 - 25132371
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaattagca 688  Q
    |||||||||||||||||||||||||| ||||||||||    
T  25132335 tttttgaagaagctaaattagcccacccaaattagca 25132371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 398
Target Start/End: Original strand, 23474929 - 23474975
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaatt 398  Q
    |||||||| ||||||||||||||||||||||| ||| |||| |||||    
T  23474929 gaaaattgttcttctcccaacaaaaaacgctctctcccataaaaatt 23474975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 380
Target Start/End: Original strand, 1505542 - 1505571
Alignment:
Q  351 ggaaaattgctcttctcccaacaaaaaacg 380  Q
    ||||||||||||||||||||||||||||||    
T  1505542 ggaaaattgctcttctcccaacaaaaaacg 1505571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 23533269 - 23533349
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaattaaactgaccaaaatacgc-ccacgtgagttaacttacgt 436  Q
    |||||||| |||||||||||||||||| |||||||| ||||      ||||| |||||||||| | ||||||||||||||| ||||    
T  23533269 gaaaattgttcttctcccaacaaaaaatgctcactcccata-----aaaacttaccaaaatacccaccacgtgagttaactcacgt 23533349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 11720916 - 11720948
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  11720916 tttttgaagaagctaaattagcccacccaaatt 11720948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 23457499 - 23457459
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacata 392  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  23457499 gaaaattgttcttctccaaacaaaaaacgctcactcccata 23457459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 25590731 - 25590699
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  25590731 tttttgaagaagctaaattagcccactcaaatt 25590699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 51 - 104
Target Start/End: Original strand, 18745508 - 18745561
Alignment:
Q  51 gaaataaatataaatgattattctttatcatctttcataaatgaagatggatgg 104  Q
    |||||||||||| | || |||||||||||||||||||||||| |||||||||||    
T  18745508 gaaataaatatacaagaatattctttatcatctttcataaataaagatggatgg 18745561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 8030160 - 8030192
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  8030160 tttttgaagaagctaaattagcccacccaaatt 8030192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 522 - 579
Target Start/End: Original strand, 12828598 - 12828657
Alignment:
Q  522 tattttagtcagtttgtatgagagtgaaagtctttt--ttgggagaagagcaattttctt 579  Q
    |||||| |||||||||||||||||||||  | ||||  |||||||||||| |||||||||    
T  12828598 tattttggtcagtttgtatgagagtgaacattttttggttgggagaagagaaattttctt 12828657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 554 - 582
Target Start/End: Original strand, 20822075 - 20822103
Alignment:
Q  554 ttttttgggagaagagcaattttcttaca 582  Q
    |||||||||||||||||||||||||||||    
T  20822075 ttttttgggagaagagcaattttcttaca 20822103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 26310454 - 26310410
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    |||||||||| ||||||||||||||||| ||||||  ||||||||    
T  26310454 gaaaattgcttttctcccaacaaaaaacactcactttcatacaaa 26310410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 416 - 468
Target Start/End: Original strand, 27940431 - 27940483
Alignment:
Q  416 cccacgtgagttaacttacgtaggtgttaaaccaacgtgacttaagcgacgtt 468  Q
    |||| |||| |||||| ||||||||||  |||||||||||||||||| |||||    
T  27940431 cccatgtgacttaactcacgtaggtgtgtaaccaacgtgacttaagccacgtt 27940483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 28635816 - 28635784
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  28635816 tttttgaagaagctaaattagcccacccaaatt 28635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 688
Target Start/End: Original strand, 37274415 - 37274451
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaattagca 688  Q
    ||||||||||||||||||||||||||  |||||||||    
T  37274415 tttttgaagaagctaaattagcccacttaaattagca 37274451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 51954234 - 51954202
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  51954234 tttttgaagaagctaaattagcccacccaaatt 51954202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 392
Target Start/End: Original strand, 52073270 - 52073310
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacata 392  Q
    |||||||||||||||||||||||||||| | ||||| ||||    
T  52073270 gaaaattgctcttctcccaacaaaaaacacacactcccata 52073310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 396
Target Start/End: Complemental strand, 30259919 - 30259878
Alignment:
Q  355 aattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||||||||||||||||||||| ||||||||    
T  30259919 aattgctcttctcccaacaaaaaacgctcactcccatacaaa 30259878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 652 - 688
Target Start/End: Original strand, 10445095 - 10445131
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaattagca 688  Q
    |||||||||||||||||||||||||| ||||||||||    
T  10445095 tttttgaagaagctaaattagcccactcaaattagca 10445131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 352 - 396
Target Start/End: Complemental strand, 38421417 - 38421373
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||||||||||||||||||| |||| | ||||||    
T  38421417 gaaaattgctcttctcccaacaaaaaacgctgactcccttacaaa 38421373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 25858091 - 25858058
Alignment:
Q  351 ggaaaattgctcttctcccaacaaaaaacgctca 384  Q
    ||||||||||||||||||||||||||||| ||||    
T  25858091 ggaaaattgctcttctcccaacaaaaaacactca 25858058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 8075083 - 8075115
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  8075083 tttttgaagaagctaaattagcccacccaaatt 8075115  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 10499065 - 10499097
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  10499065 tttttgaagaagctaaattagcccacccaaatt 10499097  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 51903834 - 51903866
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  51903834 tttttgaagaagctaaattagcccactcaaatt 51903866  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 498 - 577
Target Start/End: Complemental strand, 5449568 - 5449485
Alignment:
Q  498 agcgtgaattaactcacgcgg--gggtattttagtcagtttgtatgagagtgaaagtcttttttg---ggagaagagcaattttc 577  Q
    |||||||||||||||||||||  ||| ||||| ||||||||||||| ||||||| | ||||||||   |||||||||||||||||    
T  5449568 agcgtgaattaactcacgcggaagggcattttggtcagtttgtatgggagtgaacg-cttttttgtttggagaagagcaattttc 5449485  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 498 - 544
Target Start/End: Original strand, 34397003 - 34397048
Alignment:
Q  498 agcgtgaattaactcacgcgggggtattttagtcagtttgtatgaga 544  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||    
T  34397003 agcgtgaattaactcacgcggga-tattttagtcagtttgtatgaga 34397048  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 520 - 578
Target Start/End: Complemental strand, 1706647 - 1706589
Alignment:
Q  520 ggtattttagtcagtttgtatgagagtgaaagtcttttttgggagaagagcaattttct 578  Q
    ||||||||  ||||||||||||| |||||  || ||| |||||||||||||||||||||    
T  1706647 ggtattttgatcagtttgtatgaaagtgagcgtttttattgggagaagagcaattttct 1706589  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 4974691 - 4974735
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcactcacatacaaa 396  Q
    ||||||||||||||||  |||||||||||||||||  ||||||||    
T  4974691 gaaaattgctcttctcttaacaaaaaacgctcacttccatacaaa 4974735  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 498 - 559
Target Start/End: Complemental strand, 5451128 - 5451065
Alignment:
Q  498 agcgtgaattaactcacgcgg--gggtattttagtcagtttgtatgagagtgaaagtctttttt 559  Q
    |||||||||||||||||||||  ||| |||||  |||||||||||| ||||||| || ||||||    
T  5451128 agcgtgaattaactcacgcggaagggcattttgatcagtttgtatgggagtgaacgtttttttt 5451065  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 688
Target Start/End: Complemental strand, 6385982 - 6385946
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaattagca 688  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  6385982 ttttttaagaagctaaattagcccacccaaattagca 6385946  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 8597703 - 8597735
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  8597703 tttttgaagaagctaaattagcccacccaaatt 8597735  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 20213161 - 20213129
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  20213161 tttttgaagaagctaaattagcccacccaaatt 20213129  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Complemental strand, 22107184 - 22107152
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  22107184 tttttgaagaagctaaattagcccacccaaatt 22107152  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 31622947 - 31622979
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  31622947 tttttgaagaagctaaattagcccacccaaatt 31622979  T

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Target: scaffold0260 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 352 - 386
Target Start/End: Complemental strand, 20593 - 20559
Alignment:
Q  352 gaaaattgctcttctcccaacaaaaaacgctcact 386  Q
    ||||||||||||| |||||||||||||||||||||    
T  20593 gaaaattgctcttttcccaacaaaaaacgctcact 20559  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 652 - 684
Target Start/End: Original strand, 6878 - 6910
Alignment:
Q  652 tttttgaagaagctaaattagcccacgcaaatt 684  Q
    |||||||||||||||||||||||||| ||||||    
T  6878 tttttgaagaagctaaattagcccactcaaatt 6910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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