View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1351_low_31 (Length: 330)
Name: NF1351_low_31
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 5393367 - 5393045
Alignment:
| Q |
1 |
attgtactccaaggtgattaagattcatataaagaatttatctacgtcaacatatagtannnnnnnnctatagacatcagttatggatcgaaatttttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
5393367 |
attgtactccaaggtgattaagattcatataaataattgatctacgtcaacatagttt-ttttttttctatagacatcagttatggatcgaaatttttgg |
5393269 |
T |
|
| Q |
101 |
ccaaatgataagtgatttgagcatctatcacttt--cgcacaccatgttagtggagtaaatcatattctagtcttgaaatttttatggatacactttaca |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
|
|
| T |
5393268 |
ccaaatgataagtgatttgagcatctatcactttggcgcacaccatgttagtggagtaaatcatattatagtcttgaaatttttatggatacact--aca |
5393171 |
T |
|
| Q |
199 |
ttatgttgtatgatcttgtttaatcaagtttccatttctgtgttctcttctctgctgtgttctgtagatgagttcgaattcttatcatgtctttctctta |
298 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5393170 |
ttatgttgtgtgatcttgtttaatcaagtttccatttctgtgttctcttctctgctgtgttctggagatgagttcgaattcttatcatgtctttctctta |
5393071 |
T |
|
| Q |
299 |
tatcaatcatctgtctactcttctct |
324 |
Q |
| |
|
||||| |||| ||||||||||||||| |
|
|
| T |
5393070 |
tatcactcatttgtctactcttctct |
5393045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University