View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_33 (Length: 322)
Name: NF1351_low_33
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 317
Target Start/End: Complemental strand, 13274938 - 13274622
Alignment:
| Q |
1 |
tgcagccgaggtaataaaagaacgataatcccaaaatccagaagcatgtgccgttggatcattccgtttcgagaacaaattctcaaattggtatgtttgg |
100 |
Q |
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| T |
13274938 |
tgcagccgcggtaataaaagaacgataatcccaaaatccagaagcatgtgccgttggatcattccgtttcgagaacaaattctcaaattggtatgtttgg |
13274839 |
T |
|
| Q |
101 |
aaataatcagatatagtctcattgcaacaatacactgaccaacctttacattcccaccctttgtcacatagtttctttccctttaccgttttcaccaatg |
200 |
Q |
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| T |
13274838 |
aaataatcggatatagtctcattgcaacaatacactgaccaacctttacattcccaccctttgtcacatagtttctttccctttaccgttttcaccaatg |
13274739 |
T |
|
| Q |
201 |
gcttcactgatgtttgtgcatttcctatcactaatattgttgcaatggctaatagaaaaaatgtccatttggaattcattttttcttgaatcaatgaatc |
300 |
Q |
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| T |
13274738 |
gcttcactgatgtttgtgcatttcctatcactaatattgttgcaatggctaatagaaaaaatgtccatttggaattcattttttcttgaatcaatgaatc |
13274639 |
T |
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| Q |
301 |
atgttatctgtggtgct |
317 |
Q |
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| T |
13274638 |
atgttatgtgtgttgct |
13274622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 6896775 - 6896931
Alignment:
| Q |
12 |
taataaaagaacgataatcccaaaatccagaagcatgtgccgttggatcattccgtttcgagaacaaattctcaaattggtatgtttggaaataatcaga |
111 |
Q |
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| T |
6896775 |
taataaaagaatgataatcccaaaacccaacagcatgagcaattggagtattcctttttgaaaacagattctcaaattgataggtttgaaaataatcagt |
6896874 |
T |
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| Q |
112 |
tatagtctcattgcaacaatacactgaccaacctttacattcccaccctttgtcaca |
168 |
Q |
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| T |
6896875 |
tattgttaaattacaacaatatattgaccatcctttacattcccatcctttatcaca |
6896931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 47522658 - 47522564
Alignment:
| Q |
74 |
aacaaattctcaaattggtatgtttggaaataatcagatatagtctcattgcaacaatacactgaccaacctttacattcccaccctttgtcaca |
168 |
Q |
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|||| |||||| ||||| || ||||| | |||||||| ||| || |||||||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
47522658 |
aacagattctcgaattgataggtttgaagataatcagttatggttaaattgcaacaataaatcgaccaacctttacattcccaacctttgtcaca |
47522564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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