View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_37 (Length: 285)

Name: NF1351_low_37
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_37
NF1351_low_37
[»] chr4 (7 HSPs)
chr4 (1-255)||(52791848-52792105)
chr4 (57-96)||(55118764-55118803)
chr4 (57-114)||(6948197-6948254)
chr4 (57-114)||(11160649-11160706)
chr4 (26-103)||(11174639-11174716)
chr4 (26-103)||(11182101-11182178)
chr4 (61-102)||(11932019-11932060)
[»] chr8 (3 HSPs)
chr8 (42-110)||(24412640-24412708)
chr8 (42-108)||(24406502-24406568)
chr8 (62-115)||(24817213-24817266)
[»] chr5 (4 HSPs)
chr5 (17-102)||(8991402-8991487)
chr5 (52-102)||(35390550-35390600)
chr5 (17-102)||(8981897-8981982)
chr5 (52-104)||(36686932-36686984)


Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 52792105 - 52791848
Alignment:
Q  1 gcatatgattgagggcgattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52792105 gcatatgattgagggcgattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgtt 52792006  T
Q  101 gaagctaccagttccacttccgaagatcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52792005 gaagctaccagttccacttccgaagatcacaaggtatgggacgctgatttcatcaaggaggttaatgtggttatgctattcgaactcatccgggccgcaa 52791906  T
Q  201 actatttaaacgtcaagagccttttgga---tcttacatgtcaagttgtagcaaacat 255  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  52791905 actatttaaacgtcaagagccttttggatcttcttacatgtcaagttgtagcaaacat 52791848  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 55118764 - 55118803
Alignment:
Q  57 gcaagatcttgacgaaggttattgagtattgtaagaagca 96  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  55118764 gcaagatcttgacgaaggttattgaatactgtaagaagca 55118803  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 6948254 - 6948197
Alignment:
Q  57 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 114  Q
    ||||| ||||| | ||||||||||||||||| |||||||| ||||| ||| |||||||    
T  6948254 gcaagttcttggctaaggttattgagtattgcaagaagcatgttgaggctgccagttc 6948197  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 114
Target Start/End: Original strand, 11160649 - 11160706
Alignment:
Q  57 gcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttc 114  Q
    ||||||||||| | | |||||||||| |||| |||||||| ||||| |||||||||||    
T  11160649 gcaagatcttggctatggttattgagcattgcaagaagcatgttgacgctaccagttc 11160706  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 11174639 - 11174716
Alignment:
Q  26 gacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 103  Q
    |||| |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11174639 gacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11174716  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 11182101 - 11182178
Alignment:
Q  26 gacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaa 103  Q
    |||| |||||| ||| ||||||| | |||| ||||||||||| | |||||||| |||||||| ||||| || ||||||    
T  11182101 gacactggaatccctattccgaatgtaactggcaagatcttggctaaggttatcgagtattgcaagaaacatgttgaa 11182178  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Complemental strand, 11932060 - 11932019
Alignment:
Q  61 gatcttgacgaaggttattgagtattgtaagaagcacgttga 102  Q
    ||||||| ||||||||||||||||||| |||||||| |||||    
T  11932060 gatcttggcgaaggttattgagtattgcaagaagcatgttga 11932019  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 24412640 - 24412708
Alignment:
Q  42 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctacca 110  Q
    |||| |||| ||| |||||||||||||| |||||||| ||||||||||||||||| ||||| |||||||    
T  24412640 ttccaaacgtaaccagcaagatcttgacaaaggttatcgagtattgtaagaagcatgttgaggctacca 24412708  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 108
Target Start/End: Complemental strand, 24406568 - 24406502
Alignment:
Q  42 ttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaagctac 108  Q
    |||| |||| ||| |||||||||||| | |||||||| ||||||||||||||||| ||||| |||||    
T  24406568 ttccaaacgtaaccagcaagatcttggcaaaggttatcgagtattgtaagaagcatgttgaggctac 24406502  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 24817213 - 24817266
Alignment:
Q  62 atcttgacgaaggttattgagtattgtaagaagcacgttgaagctaccagttcc 115  Q
    |||||| |||| |||||||||||||| |||||||| ||||| ||||| ||||||    
T  24817213 atcttggcgaaagttattgagtattgcaagaagcatgttgaggctacaagttcc 24817266  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 8991402 - 8991487
Alignment:
Q  17 gattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 102  Q
    ||||| ||||||| |||||| ||| |||| ||||  || |||||||||||| ||||||| ||||||||||| |||||||| |||||    
T  8991402 gattgcgctgacagtggaatccctcttcccaacgttaccagcaagatcttggcgaaggtgattgagtattgcaagaagcatgttga 8991487  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 35390600 - 35390550
Alignment:
Q  52 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 102  Q
    ||||||||| |||||| |||||||||||||||||||||| ||||| |||||    
T  35390600 aactagcaacatcttggcgaaggttattgagtattgtaaaaagcatgttga 35390550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 8981897 - 8981982
Alignment:
Q  17 gattgagctgacaatggaatacctgttccgaacgcaactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttga 102  Q
    ||||| ||||||| |||||| ||| |||| ||||  || || ||||||||| ||||||| ||||||||||| |||||||| |||||    
T  8981897 gattgcgctgacagtggaatccctcttcccaacgttaccagtaagatcttggcgaaggtgattgagtattgcaagaagcatgttga 8981982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 104
Target Start/End: Complemental strand, 36686984 - 36686932
Alignment:
Q  52 aactagcaagatcttgacgaaggttattgagtattgtaagaagcacgttgaag 104  Q
    ||||||||| |||||| | ||||||||||| |||||||| ||||| |||||||    
T  36686984 aactagcaacatcttggcaaaggttattgaatattgtaaaaagcatgttgaag 36686932  T

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