View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_42 (Length: 274)
Name: NF1351_low_42
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_42 |
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Alignment Details
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 79 - 242
Target Start/End: Complemental strand, 8252468 - 8252308
Alignment:
| Q |
79 |
gggttgcgacaccgactatgatagtaaaaagcaatatgagcaaattttatattaagccatcagtaagaaaacaacttaactttattcaaaaggtgataag |
178 |
Q |
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| T |
8252468 |
gggttgcgacaccaactatgatagttaaaagcaatatgagcaaattttatattaagccatcagtaagaaaacaacttaactttatccaagaggtgataag |
8252369 |
T |
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| Q |
179 |
tagagcttcctttattattaaaaatcttattgttatgatattttcaaataactcatgcacaaga |
242 |
Q |
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| T |
8252368 |
tagagcttcctctattattaaaaatc---ttgttatgatgttttcaaataactcatgcacaaga |
8252308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 24248124 - 24248271
Alignment:
| Q |
95 |
tatgatagtaaaaagcaatatgagcaaattttatattaagccatcagtaagaaaacaacttaactttattcaaaaggtgataagtagagcttcctttatt |
194 |
Q |
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| T |
24248124 |
tatggtagtcaaaagcattatgaacaaattttgccttcagtcactagtaagaaaacaacataaatttgttcaagaggtgataattagagcttcctttatt |
24248223 |
T |
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| Q |
195 |
attaaaaatcttattgttatgatattttcaaataactcatgcacaaga |
242 |
Q |
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| T |
24248224 |
attaaaaatcatgctgttccgatctttccaaataacccatgcacaaga |
24248271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 40930210 - 40930087
Alignment:
| Q |
86 |
gacaccgactatgatagtaaaaagcaatatgagcaaattttatattaagccatcagtaagaaaacaacttaactttattcaaaaggtgataagtagagct |
185 |
Q |
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| T |
40930210 |
gacaccgactatgatattcaaaatcaatatgagcaaattttgctttcaaccactagtaagataacaacctaattttatctaaaaggtgataattagaact |
40930111 |
T |
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| Q |
186 |
tcctttattattaaaaatcttatt |
209 |
Q |
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| T |
40930110 |
tcatttattcttaaaaatcctatt |
40930087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 243
Target Start/End: Complemental strand, 11267801 - 11267652
Alignment:
| Q |
93 |
actatgatagtaaaaagcaatatgagcaaattttatattaagccatcagtaagaaaacaacttaactttattcaaaaggtgataagtagagcttccttta |
192 |
Q |
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| T |
11267801 |
actataatagtcaaaggcaatatgagcaaattgtgctttcggccaccggtaagaaaa-aactcaattttatccaagaggtaattaatagagcttccttta |
11267703 |
T |
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| Q |
193 |
ttattaaaaatcttattgttatgatattttcaaataactcatgcacaagaa |
243 |
Q |
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| T |
11267702 |
ttattaaaaatcatgttgttccgatcttttcaaataaccaatgcacaagaa |
11267652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 1487146 - 1487187
Alignment:
| Q |
85 |
cgacaccgactatgatagtaaaaagcaatatgagcaaatttt |
126 |
Q |
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| T |
1487146 |
cgacaccaactatgatagtcaaaagcaatatgagcaactttt |
1487187 |
T |
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