View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_44 (Length: 270)
Name: NF1351_low_44
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 16962038 - 16961907
Alignment:
| Q |
29 |
atcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggacaata |
128 |
Q |
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| T |
16962038 |
atcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggacaata |
16961939 |
T |
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| Q |
129 |
atctcaatccaaaagttagtggatatagcatt |
160 |
Q |
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| T |
16961938 |
atctcaatccaaaagttagtggatatagcatt |
16961907 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 24827687 - 24827809
Alignment:
| Q |
31 |
cataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggacaataat |
130 |
Q |
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| T |
24827687 |
cataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatgatagt |
24827786 |
T |
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| Q |
131 |
ctcaatccaaaagttagtggata |
153 |
Q |
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|| ||| |||||||||||||||| |
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| T |
24827787 |
cttaatgcaaaagttagtggata |
24827809 |
T |
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