View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_47 (Length: 262)
Name: NF1351_low_47
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 16962041 - 16961907
Alignment:
| Q |
18 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
117 |
Q |
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| T |
16962041 |
atcatcataggcattgctagaggaattcaattcttacatacaggagttaatcctggcatatatggaaacaacataaagattgagaacattttgttggaca |
16961942 |
T |
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| Q |
118 |
ataatctcaatccaaaagttagtggatatagcatt |
152 |
Q |
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| T |
16961941 |
ataatctcaatccaaaagttagtggatatagcatt |
16961907 |
T |
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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 24827682 - 24827809
Alignment:
| Q |
18 |
atcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaacattaagattgagaacattttgttggaca |
117 |
Q |
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|||| |||||| ||||| |||||| |||| ||| |||||||||||||| |||||| |||| ||| ||||| | ||||||||||| |||||||| || |
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| T |
24827682 |
atcagcataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatttcaagattgagaatattttgttagatg |
24827781 |
T |
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| Q |
118 |
ataatctcaatccaaaagttagtggata |
145 |
Q |
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||| ||| ||| |||||||||||||||| |
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| T |
24827782 |
atagtcttaatgcaaaagttagtggata |
24827809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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