View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_49 (Length: 254)

Name: NF1351_low_49
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_49
NF1351_low_49
[»] chr3 (1 HSPs)
chr3 (95-246)||(23510009-23510160)
[»] chr2 (1 HSPs)
chr2 (115-218)||(15585564-15585668)
[»] chr4 (3 HSPs)
chr4 (99-218)||(4453820-4453938)
chr4 (111-211)||(22783330-22783430)
chr4 (117-222)||(20804536-20804649)
[»] chr8 (2 HSPs)
chr8 (101-211)||(4309424-4309534)
chr8 (109-163)||(28422445-28422498)
[»] chr1 (2 HSPs)
chr1 (139-222)||(11665617-11665700)
chr1 (95-158)||(25219354-25219417)
[»] chr6 (2 HSPs)
chr6 (151-211)||(31801002-31801062)
chr6 (115-211)||(3952555-3952648)
[»] chr7 (1 HSPs)
chr7 (109-182)||(23375388-23375461)


Alignment Details
Target: chr3 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 23510009 - 23510160
Alignment:
Q  95 caactgaaatccaaagaattatttaaagttacatgattcaaacaattacaagaagctcctctttcatgatctaatttagagaggtttagttgctcgtgat 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||||||| ||||||||    
T  23510009 caactgaaatccaaagaattatttaaagttacatgattcaaacaattacaagaagctcttctttcatgatctagcctagagaggtttagttactcgtgat 23510108  T
Q  195 gtctaaacacatattaaactatatgaatnnnnnnncacattagagaataatc 246  Q
    ||||||||||||||||||||||||||||       |||||||||||||||||    
T  23510109 gtctaaacacatattaaactatatgaataaaaaaacacattagagaataatc 23510160  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 218
Target Start/End: Complemental strand, 15585668 - 15585564
Alignment:
Q  115 atttaaagttacatgattcaaacaattacaagaagctc-ctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaaacacatattaaac 213  Q
    |||||||||||||||| ||||||||||||| ||||||  || |||||||||||||| ||||| | ||||| | ||| |||||||||| ||||||||||||    
T  15585668 atttaaagttacatgaatcaaacaattacatgaagctttctttttcatgatctaatctagagtgttttagctactcatgatgtctaagcacatattaaac 15585569  T
Q  214 tatat 218  Q
    |||||    
T  15585568 tatat 15585564  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 218
Target Start/End: Original strand, 4453820 - 4453938
Alignment:
Q  99 tgaaatccaaagaattatttaaagttacatgattcaaacaattacaagaagctcctctttcatgatctaatttagagaggtttagttgctcgtgatgtct 198  Q
    ||||||||| | ||| |||||||||||||||||||||| ||||||| ||||||||| |||||  | ||| | ||||||| ||||| | ||| ||||||||    
T  4453820 tgaaatccacataatcatttaaagttacatgattcaaataattacatgaagctcct-tttcaccacctagtctagagagatttagctactcatgatgtct 4453918  T
Q  199 aaacacatattaaactatat 218  Q
    ||||| ||||||||||||||    
T  4453919 aaacatatattaaactatat 4453938  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 111 - 211
Target Start/End: Complemental strand, 22783430 - 22783330
Alignment:
Q  111 aattatttaaagttacatgattcaaacaattacaagaagctcctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaaacacatatta 210  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||    || ||| |||||| | ||| |||| |||||||||||||||    
T  22783430 aattatttaaagttacatgattcaaacaatgacaggaagcttctctttcatgacctggcctatagaagtttagatactcatgatatctaaacacatatta 22783331  T
Q  211 a 211  Q
    |    
T  22783330 a 22783330  T

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Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 20804649 - 20804536
Alignment:
Q  117 ttaaagttacatgattcaaacaattacaagaagctcctctttcatgat-ctaatttagagaggtttagttgctcgtgatg-------tctaaacacatat 208  Q
    |||||||| |||||||||||||||||||||||| || | ||||||||| |||   ||||||||||||||| ||| |||||       |||||||||||||    
T  20804649 ttaaagttgcatgattcaaacaattacaagaaggtcatatttcatgatcctagcctagagaggtttagttactcatgatgtctaaactctaaacacatat 20804550  T
Q  209 taaactatatgaat 222  Q
    ||||||||||||||    
T  20804549 taaactatatgaat 20804536  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 101 - 211
Target Start/End: Original strand, 4309424 - 4309534
Alignment:
Q  101 aaatccaaagaattatttaaagttacatgattcaaacaattacaagaagctcctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaa 200  Q
    ||||||||| |||||||||||| | |  |||||||||||||||| |||||||||||||||||| |||   ||||||||||||| |  || |||| |||||    
T  4309424 aaatccaaaaaattatttaaagctgctcgattcaaacaattacatgaagctcctctttcatgacctagcctagagaggtttagatattcatgatatctaa 4309523  T
Q  201 acacatattaa 211  Q
    ||| |||||||    
T  4309524 acatatattaa 4309534  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 163
Target Start/End: Original strand, 28422445 - 28422498
Alignment:
Q  109 agaattatttaaagttacatgattcaaacaattacaagaagctcctctttcatga 163  Q
    |||||||||||||||||||||| |||||||||||||  ||| |||||||||||||    
T  28422445 agaattatttaaagttacatga-tcaaacaattacataaagttcctctttcatga 28422498  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 139 - 222
Target Start/End: Complemental strand, 11665700 - 11665617
Alignment:
Q  139 attacaagaagctcctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaaacacatattaaactatatgaat 222  Q
    ||||||||||||||||||||||||||||||  |||||||||||| || |||  ||| |||||||||||  ||||||||| ||||    
T  11665700 attacaagaagctcctctttcatgatctaacctagagaggtttaattactcaggatatctaaacacatgctaaactatacgaat 11665617  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 25219417 - 25219354
Alignment:
Q  95 caactgaaatccaaagaattatttaaagttacatgattcaaacaattacaagaagctcctcttt 158  Q
    ||||| ||||| ||||||||||||||||||||| |||| |||||| || | ||||| |||||||    
T  25219417 caactaaaatctaaagaattatttaaagttacaagatttaaacaactataggaagcccctcttt 25219354  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 31801002 - 31801062
Alignment:
Q  151 tcctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaaacacatattaa 211  Q
    ||||||||||||| || || ||||||||||||| | ||| ||||||||||||| |||||||    
T  31801002 tcctctttcatgacctgatctagagaggtttagctactcatgatgtctaaacatatattaa 31801062  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 3952648 - 3952555
Alignment:
Q  115 atttaaagttacatgattcaaacaattaca-agaagctcctctttcatgatctaatttagagaggtttagttgctcgtgatgtctaaacacatattaa 211  Q
    |||||||||||||| ||| || |||||||| ||||| |||||||| |||| ||||  ||||||||| |||   ||| |||||||||||||||||||||    
T  3952648 atttaaagttacataattgaa-caattacagagaagttcctctttaatgacctaacctagagaggtgtag---ctcatgatgtctaaacacatattaa 3952555  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 23375388 - 23375461
Alignment:
Q  109 agaattatttaaagttacatgattcaaacaattacaag-aagctcctctttcatgatctaatttagagaggttta 182  Q
    |||||| ||||||||||||| || | |||||||||||| ||| ||||||||||||| ||||  ||||||||||||    
T  23375388 agaattgtttaaagttacataat-cgaacaattacaaggaagttcctctttcatgacctaacctagagaggttta 23375461  T

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