View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_55 (Length: 251)
Name: NF1351_low_55
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_55 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23509889 - 23509668
Alignment:
| Q |
1 |
tgatttgtttgattgttttccagtgtagacatattttaggtataatattgtattaaatttggcgttctaaaaccttcatcagtcttcaactcacttaaga |
100 |
Q |
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| T |
23509889 |
tgatttgtttgattgttttccagtgtagacatattttatgtataatattgtattaaatttggcgtttcaaaaccttcatctgtcttcaactcacttaaga |
23509790 |
T |
|
| Q |
101 |
cattagggagtatgaacattaaagagagttaatgtcaaggaattggcctaaccatttttatttatcaaatattattaagccaagcaatatgtcaacactg |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23509789 |
cattagggagtatgaacattgaagagagttaatgtcaaggaattggcctaaccatttttatttatcaaatattattaagccaagcaatatgtcaacactg |
23509690 |
T |
|
| Q |
201 |
tatccatagtttgtagtcaatc |
222 |
Q |
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||||||||||||| ||||||| |
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| T |
23509689 |
tatccatagtttgcggtcaatc |
23509668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 22783593 - 22783695
Alignment:
| Q |
26 |
tagacatattttaggtataatattgtattaaatttggcgttctaaaaccttcatcagtcttca-actcacttaagacattagggagtatgaacattaaag |
124 |
Q |
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|||||||||| |||| ||||| |||||||||||||| |||||||||||| || ||| | | |||||| |||||||||||||||||||| |||| ||| |
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| T |
22783593 |
tagacatattataggaataattgtgtattaaatttggtgttctaaaacctacaatggtcatgacactcacctaagacattagggagtatgaccattgaag |
22783692 |
T |
|
| Q |
125 |
aga |
127 |
Q |
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||| |
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| T |
22783693 |
aga |
22783695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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