View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1351_low_56 (Length: 251)

Name: NF1351_low_56
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1351_low_56
NF1351_low_56
[»] chr7 (12 HSPs)
chr7 (1-203)||(21277503-21277705)
chr7 (1-203)||(15654157-15654360)
chr7 (1-199)||(46623189-46623388)
chr7 (23-187)||(3632310-3632475)
chr7 (25-186)||(28326865-28327027)
chr7 (25-186)||(13439561-13439724)
chr7 (28-202)||(9546251-9546424)
chr7 (1-52)||(19402705-19402756)
chr7 (25-186)||(30385709-30385871)
chr7 (99-187)||(45235534-45235622)
chr7 (98-187)||(12379193-12379282)
chr7 (99-137)||(17052993-17053031)
[»] chr1 (20 HSPs)
chr1 (1-203)||(36928653-36928855)
chr1 (1-203)||(36305270-36305472)
chr1 (1-199)||(25639919-25640118)
chr1 (19-203)||(47115793-47115976)
chr1 (1-199)||(4644500-4644697)
chr1 (1-199)||(14366081-14366277)
chr1 (1-199)||(52336150-52336346)
chr1 (25-186)||(32353766-32353928)
chr1 (25-186)||(48073901-48074064)
chr1 (2-71)||(17921594-17921663)
chr1 (1-199)||(21527648-21527845)
chr1 (25-186)||(38231196-38231358)
chr1 (1-199)||(48266174-48266371)
chr1 (98-186)||(3692210-3692298)
chr1 (98-187)||(37530147-37530236)
chr1 (110-199)||(14119359-14119449)
chr1 (1-182)||(9528226-9528406)
chr1 (99-137)||(21404422-21404460)
chr1 (5-75)||(28053880-28053950)
chr1 (23-68)||(14119118-14119163)
[»] chr8 (11 HSPs)
chr8 (1-203)||(7451838-7452040)
chr8 (1-199)||(19385166-19385362)
chr8 (25-186)||(16421478-16421639)
chr8 (1-87)||(12220701-12220787)
chr8 (92-200)||(12218472-12218580)
chr8 (25-186)||(2871701-2871862)
chr8 (1-75)||(12531156-12531230)
chr8 (98-197)||(28542586-28542685)
chr8 (100-187)||(35405329-35405416)
chr8 (109-187)||(412833-412911)
chr8 (24-69)||(35405252-35405297)
[»] chr2 (11 HSPs)
chr2 (1-199)||(45421003-45421202)
chr2 (23-186)||(33547378-33547543)
chr2 (5-187)||(31086105-31086287)
chr2 (98-187)||(9949732-9949821)
chr2 (98-187)||(31594137-31594226)
chr2 (98-199)||(13549707-13549808)
chr2 (25-187)||(26681390-26681553)
chr2 (98-187)||(22052210-22052299)
chr2 (27-186)||(43627009-43627170)
chr2 (25-187)||(35694142-35694305)
chr2 (10-74)||(32145397-32145461)
[»] scaffold0418 (1 HSPs)
scaffold0418 (1-199)||(7160-7359)
[»] chr4 (17 HSPs)
chr4 (1-199)||(7663694-7663893)
chr4 (1-111)||(1121521-1121631)
chr4 (103-203)||(1121096-1121196)
chr4 (1-195)||(3130439-3130631)
chr4 (1-175)||(23279092-23279267)
chr4 (25-186)||(8487450-8487612)
chr4 (23-187)||(33312906-33313071)
chr4 (25-186)||(12776676-12776839)
chr4 (1-199)||(47540413-47540609)
chr4 (25-186)||(55298131-55298294)
chr4 (98-186)||(23873945-23874033)
chr4 (1-199)||(5817637-5817834)
chr4 (1-199)||(8655529-8655726)
chr4 (25-186)||(20673218-20673380)
chr4 (25-186)||(2630908-2631069)
chr4 (109-199)||(25875146-25875236)
chr4 (25-69)||(23874063-23874108)
[»] chr3 (15 HSPs)
chr3 (1-199)||(30167801-30168000)
chr3 (1-199)||(32004468-32004664)
chr3 (25-186)||(6176947-6177109)
chr3 (25-186)||(23601282-23601444)
chr3 (25-186)||(29308917-29309078)
chr3 (25-186)||(2813969-2814131)
chr3 (38-199)||(49732389-49732548)
chr3 (98-187)||(25873580-25873669)
chr3 (27-186)||(7146553-7146712)
chr3 (1-56)||(38542814-38542869)
chr3 (1-195)||(13447967-13448158)
chr3 (95-199)||(9378676-9378781)
chr3 (130-199)||(28675385-28675454)
chr3 (99-137)||(31546955-31546993)
chr3 (99-137)||(31778237-31778275)
[»] chr6 (10 HSPs)
chr6 (25-186)||(15673334-15673496)
chr6 (33-186)||(13754983-13755136)
chr6 (1-195)||(33629586-33629777)
chr6 (25-187)||(8873294-8873457)
chr6 (25-186)||(23347935-23348097)
chr6 (98-199)||(25317437-25317538)
chr6 (98-199)||(26204931-26205032)
chr6 (1-139)||(1682528-1682664)
chr6 (98-166)||(19348857-19348925)
chr6 (25-68)||(14003427-14003470)
[»] chr5 (6 HSPs)
chr5 (1-199)||(10487362-10487559)
chr5 (25-186)||(34858162-34858325)
chr5 (23-187)||(6264666-6264833)
chr5 (98-199)||(32917900-32918001)
chr5 (98-187)||(34480539-34480628)
chr5 (98-187)||(15500114-15500203)
[»] scaffold0287 (1 HSPs)
scaffold0287 (23-187)||(13610-13775)
[»] scaffold0197 (1 HSPs)
scaffold0197 (150-203)||(12322-12375)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-199)||(135092-135289)
[»] scaffold0002 (2 HSPs)
scaffold0002 (1-199)||(312919-313116)
scaffold0002 (1-199)||(328373-328570)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-71)||(22795-22866)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-66)||(48545-48610)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 21277705 - 21277503
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtta 100  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||    
T  21277705 atataacaaagcagtccctagagcacaaggtgtgccttagacactaccacaggaaccaagagttacaacaattacaaaccgtcccaaccggactacgtta 21277606  T
Q  101 gccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatcttt 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  21277605 gccaatacccaaacaaacaagagggcatgaccaccactgctgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatcttt 21277506  T
Q  201 acc 203  Q
    |||    
T  21277505 acc 21277503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 15654360 - 15654157
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattac-taaccatcccaaccagactacgtt 99  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||  ||||| ||||||  |||||| ||    
T  15654360 atataacaaagcagtccctagagcacaaggtgtgtcttagagactactacaggaaccaagagttacaacaattacaaaaccaacccaacatgactacatt 15654261  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    ||||||||||||| ||||||||||||||| |||| |||||||||||| | ||||||||  ||| ||| ||| |||||||||| |||||  ||||||||||    
T  15654260 agccaatacccaagcaaacaagagggcatgaccatcactgctgggtaccaaaaacaaaagtagttttattagctttcaaccatcctaaagacaacatctt 15654161  T
Q  200 tacc 203  Q
    ||||    
T  15654160 tacc 15654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 46623189 - 46623388
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaac-catcccaaccagactacgtt 99  Q
    |||||||||||||||||||| || | || ||||| |||||||||||| ||||||| ||||||||||||||| ||| ||  || ||||||  |||||| ||    
T  46623189 atataacaaagcagtccctacagcataaagtgtgtcttagagactactacaggaatcaagagttacaacaaatacaaaatcaacccaacatgactacatt 46623288  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    | ||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||  ||||||||||| |||||||||| |||||| ||||||||||    
T  46623289 aaccaatacccaaacaaacaagagggcatgaccaccactactgggtaccaaaaacaaaagtagcttttttagctttcaaccatcctaaggacaacatctt 46623388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 3632310 - 3632475
Alignment:
Q  23 gtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacg-ttagccaatacccaaacaaacaag 121  Q
    |||||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||| |  |  ||||||  |   |||| |||||||||||||||||||    
T  3632310 gtacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaacaaaacacaccagaaaaatattagtcaatacccaaacaaacaag 3632409  T
Q  122 agggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||| | ||||||||||||| ||  | |||||||||||| |||||||| |||||||| |||||||    
T  3632410 agggcgtgaccaccactgctgagtcccaaaaacaaagataacttttttagctttcaactaacctaa 3632475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 28326865 - 28327027
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||||||| ||||||||||||||||  |||| ||| |     | ||||  | | ||||||||||||||||||||||||||    
T  28326865 acaaggtgtgccttagagactaccacagaaaccaagagttacaacggttacaaacaaaaaacaacagaaaaacattagccaatacccaaacaaacaagag 28326964  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||  | ||| ||||||||| ||  | |||||||| |||||||||||| |||||||||||||||    
T  28326965 ggtttgaccgccactgctgagtcccaaaaacaaatatagcttttttagctttcaaccaaccta 28327027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 13439561 - 13439724
Alignment:
Q  25 acaaggtgtgcctt-agagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaaga 122  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||| |||||  || |  |  | ||||  | | |||||||||||||||||||||||||    
T  13439561 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 13439660  T
Q  123 gggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||| | |||| |||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  13439661 gggcttgaccaacactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 13439724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 9546251 - 9546424
Alignment:
Q  28 aggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgttagccaatacccaaacaaacaagaggg 125  Q
    |||||| || |||||||||| | ||||||||||||||||||||||  |  || || |||||| ||| |||| | |||| ||||||||||| | |||||||    
T  9546251 aggtgtaccatagagactacaaacaggaaccaagagttacaacaa--aacaaacaacccaac-agagctacatcagcctatacccaaacacataagaggg 9546347  T
Q  126 cataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctttac 202  Q
    ||  ||||||||||||| ||| | || |||||  ||||||||||| ||||||||||| ||||| |||||||||||||    
T  9546348 caagaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatctttac 9546424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 19402705 - 19402756
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacag 52  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  19402705 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacag 19402756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 30385709 - 30385871
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccag-actacgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||  ||| ||||||||||||||||  |||| ||| |  |  ||||| |  || ||||||||||||||||||||||||||    
T  30385709 acaaggtgtgccttagagactacatcagaaaccaagagttacaacggttacaaacaagacacaccagaaaaacattagccaatacccaaacaaacaagag 30385808  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||  | ||| || ||||||  |  | ||||||||  |||| |||||| |||||||||||||||    
T  30385809 ggtttgaccgcccctgctgaatcccaaaaacaaatgtagcatttttagctttcaaccaaccta 30385871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 45235534 - 45235622
Alignment:
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    |||||||||||||||||||||||||||| | ||||||||  ||| ||  | ||||||||| ||||||||||| | |||| |||||||||    
T  45235534 tagccaatacccaaacaaacaagagggcttgaccaccacgactgagttccaaaaacaaaggtagcttttttagcattcagccaacctaa 45235622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 12379282 - 12379193
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    |||||| || |||||||||||||| |||  | ||||||| ||||| ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  12379282 ttagcctatgcccaaacaaacaagcgggtttgaccaccattgctgtgttccaaaaacaaagttagcttttttagctttcagccaacctaa 12379193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 17052993 - 17053031
Alignment:
Q  99 tagccaatacccaaacaaacaagagggcataaccaccac 137  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  17052993 tagccaatacccaaacaaacaaaagggcttaaccaccac 17053031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 36928653 - 36928855
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtta 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||||||||    
T  36928653 atataacaaagcagtccctagagcacaaggtgtgccttagagactaccataggaaccaagagttacaacaattacaaaccaacccaatcggactacgtta 36928752  T
Q  101 gccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatcttt 200  Q
    |||||||||||||||||||||||||| |||||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  36928753 gccaatacccaaacaaacaagagggcttaaccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatcttt 36928852  T
Q  201 acc 203  Q
    |||    
T  36928853 acc 36928855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 36305270 - 36305472
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtta 100  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||| |||    
T  36305270 atataacaaaacagtccctagagcacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattacaaaccatcccaacaggactacatta 36305369  T
Q  101 gccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatcttt 200  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||  |||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  36305370 gccaatagccaaacaaacaagagggcatgaccaccactgttgggtactgaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatcttt 36305469  T
Q  201 acc 203  Q
    |||    
T  36305470 acc 36305472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 25640118 - 25639919
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaa-ccatcccaaccagactacgtt 99  Q
    |||||| ||||||||| |||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||| ||| || ||| ||||||  |||||| ||    
T  25640118 atataataaagcagtctctagagcacaaggtctgctttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaggactacatt 25640019  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    || ||||||||||||||||||||||| || ||||||||||||||||| | ||||||||  |||||||| || |||||||| ||| |||| ||||||||||    
T  25640018 agtcaatacccaaacaaacaagagggtatgaccaccactgctgggtaccaaaaacaaaagtagcttttctagctttcaactaacttaaggacaacatctt 25639919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 47115793 - 47115976
Alignment:
Q  19 tagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaac 118  Q
    ||||| |||||||||| |||||||||||| |||| |||||||||||||||||| ||| ||||| |||||| |  |||| |||||| ||||||||||| ||    
T  47115793 tagagcacaaggtgtgtcttagagactacaacagaaaccaagagttacaacaaatac-aaccaacccaacaaagctacattagcctatacccaaacacac 47115891  T
Q  119 aagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctttacc 203  Q
    |||||||||| ||||||||||||||||| | ||| |||| |||||||||||| ||||||||||  ||||| ||||||||||||||    
T  47115892 aagagggcatgaccaccactgctgggtaccaaaagcaaaaatagcttttttagctttcaaccattctaaggacaacatctttacc 47115976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 4644500 - 4644697
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||| ||| |||||||||||||||||||  || ||||| ||||| |||| |||| |     
T  4644500 atataacaatgcagtccctagagcacaaggtgtgccatagagactacaacaagaaccaagagttacaacaaaaac-aaccaacccaa-cagagctacatc 4644597  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |||||||||||  ||||||||||||| ||| | || |||||  ||||||||||  ||||||||||||||||| ||||||||||    
T  4644598 agcctatacccaaacacacaagagggcacgaccaccactgctgagtaccaaacacaaaagtagctttttttgctttcaaccaacctaaggacaacatctt 4644697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 14366277 - 14366081
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||| ||| ||||||||| |||||||||||| |||||||| | | ||||||||||||||||||||||  |  ||||| |||||| ||| |||| |    
T  14366277 atataacaatgcaatccctagagcacaaggtgtgccatagagactgcaaacaggaaccaagagttacaacaa--aacaaccaacccaac-agagctacat 14366181  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatct 198  Q
     |||| ||||||||||| |||||||||||| ||||||||||||| ||| | || ||||| |||||||||||| ||||||||||| ||||| |||||||||    
T  14366180 cagcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaa-atagcttttttagctttcaaccaagctaaggacaacatct 14366082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 52336150 - 52336346
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||||||| |||||| |||||| |||| ||||||| |||||| ||| |||||| ||||||||| ||||||  |  ||||| |||||| ||| |||| |     
T  52336150 atataacaatgcagtctctagagcacaatgtgtgccatagagattacaacaggagccaagagttgcaacaa--aacaaccaacccaac-agagctacatc 52336246  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |||||||||||| ||||||||||||| ||| | || ||||| |||||||||||| ||||||||||| ||||| ||||||||||    
T  52336247 agcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaaatagcttttttatctttcaaccaagctaaggacaacatctt 52336346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 32353928 - 32353766
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||| ||  ||||||||||||||||  |||| ||| |  |  | ||||  | | ||||||||||||||||||||||||||    
T  32353928 acaaggtgtgccttagagactacctcaaaaaccaagagttacaacggttacaaacaaaacacaacagaaaaacattagccaatacccaaacaaacaagag 32353829  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  32353828 ggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 32353766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 48074064 - 48073901
Alignment:
Q  25 acaaggtgtgcctt-agagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaaga 122  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||| |||||  || |  |  | ||||  | | |||||||||||||||||||||||||    
T  48074064 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 48073965  T
Q  123 gggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  48073964 gggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 48073901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 17921663 - 17921594
Alignment:
Q  2 tataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaa 71  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  17921663 tataacaaagcagtccctagagcacaaggtgtgccttagagactactacagaaaccaagagttacaacaa 17921594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 21527648 - 21527845
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactac-cacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||  ||||||||||||| |||||||||||| ||||||||||  |||||||||||||||||||||||  |  || || ||||| |||| |||| |    
T  21527648 atataacagtgcagtccctagagcacaaggtgtgccatagagactacaaacaggaaccaagagttacaacaa--aacaaacaacccaa-cagagctacat 21527744  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatct 198  Q
     |||| ||||||||||| | |||||||||  ||||||||||||| ||| | || |||||  ||||||||||| | ||||||||| ||||| | |||||||    
T  21527745 cagcctatacccaaacacataagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggataacatct 21527844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 38231196 - 38231358
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccag-actacgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||| ||  ||| ||||||||||||||||  |||| ||| |  |  ||||| |  || ||||||||||||||||||||||||||    
T  38231196 acaaggtgtgccttagagacaacatcagaaaccaagagttacaacggttacaaacaaaacacaccaggaaaacattagccaatacccaaacaaacaagag 38231295  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | |||||||||| || ||  | ||||| ||| ||||||||||| |||||||||||||||    
T  38231296 ggcgtgaccaccactgatgagtcccaaaaacgaaggtagcttttttagctttcaaccaaccta 38231358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 48266371 - 48266174
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||| ||| | ||||||| |||| ||||||| |||||||||| | ||||||||||||||||||||||  |  ||||| | |||| ||| |||| |    
T  48266371 atataacaatgcaattcctagagcacaatgtgtgccatagagactacaaacaggaaccaagagttacaacaa--aacaaccaacacaac-agagctacat 48266275  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatct 198  Q
     | || ||||||||||| ||||||||| || ||||||||||||  ||||| || |||||  ||| ||||||| ||||||||||| ||||| |||||||||    
T  48266274 caacctatacccaaacacacaagagggtatgaccaccactgctaagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatct 48266175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 3692210 - 3692298
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||||||||||| ||||||||||||||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  3692210 ttagccaatactcaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 3692298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 37530147 - 37530236
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    |||||||||| |||||||||||||||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  37530147 ttagccaatatccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaa 37530236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 14119359 - 14119449
Alignment:
Q  110 caaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaaga-acaacatctt 199  Q
    ||||||||||||||||| | ||||||||||||| || |||||||||||| || |||||||| |||||| ||||||||| | ||||||||||    
T  14119359 caaacaaacaagagggcttgaccaccactgctgagtttcgaaaacaaaggtaacttttttagctttcagccaacctaaaagacaacatctt 14119449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 9528406 - 9528226
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactac-cacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||| ||||||||||||| | |||||||||| ||||||||||  ||||||||||||||||||| |||  |  || || ||||| ||||  ||| |    
T  9528406 atataacaatgcagtccctagagcataaggtgtgccatagagactacaaacaggaaccaagagttacaccaa--aacaaacaacccaa-cagagttacat 9528310  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaa 182  Q
     |||| ||||||||||| | |||||| ||  ||||||||||||| ||| | || |||||  ||| |||||||||||||||||||    
T  9528309 cagcctatacccaaacacataagaggacaagaccaccactgctgagtaccaaacacaaaagtagattttttaactttcaaccaa 9528226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 21404422 - 21404460
Alignment:
Q  99 tagccaatacccaaacaaacaagagggcataaccaccac 137  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  21404422 tagccaatacccaaacaaacaaaagggcttaaccaccac 21404460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 28053950 - 28053880
Alignment:
Q  5 aacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattac 75  Q
    |||| ||||||||| | || ||||||||| |||||||||||||  ||| || ||||||||||||| |||||    
T  28053950 aacagagcagtcccaaaagcacaaggtgtaccttagagactactgcagaaatcaagagttacaacgattac 28053880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 14119118 - 14119163
Alignment:
Q  23 gtacaaggtgtgccttagagactaccacaggaaccaagagttacaa 68  Q
    ||||||||||||| |||||||||||| | | |||||||||||||||    
T  14119118 gtacaaggtgtgctttagagactacctctgaaaccaagagttacaa 14119163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 7451838 - 7452040
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtta 100  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||| ||||||||||    
T  7451838 atataacaaagcagtccctagagcacaagctgtgccttagagactaccataggaaccaagagttacaacaattacaaaccaacccaaccggactacgtta 7451937  T
Q  101 gccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatcttt 200  Q
    ||||||||||||| |||||||||||| | |||||||||| |||||| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  7451938 gccaatacccaaataaacaagagggcttgaccaccactgttgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatcttt 7452037  T
Q  201 acc 203  Q
    |||    
T  7452038 acc 7452040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 19385362 - 19385166
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    |||||||||  ||||||||| || | |||||||||| |||||||||| | |||||||||||||||||||||  |  ||||| |||||| ||| |||| |     
T  19385362 atataacaatacagtccctaaagcataaggtgtgccatagagactacaataggaaccaagagttacaacaa--aacaaccaacccaac-agagctacatc 19385266  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |||||||||||| ||||||||||||| ||| |||| |||||  ||||||||||| |||| ||||||  |||| ||||||||||    
T  19385265 agcctatacccaaacacacaagagggcatgaccaccactgctgagtaccgaacacaaaagtagcttttttagcttttaaccaagataaggacaacatctt 19385166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 16421639 - 16421478
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagg 124  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||  |||| ||| |  |  | ||||  |  |||||||||||||||||||||||||||    
T  16421639 acaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaatattagccaatacccaaacaaacaagagg 16421540  T
Q  125 gcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    || | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  16421539 gcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcaaccaaccta 16421478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 12220787 - 12220701
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaa 87  Q
    |||||||||| || ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  12220787 atataacaaaacaatccctagagcacaaggtgtgccttagagactaccacaggaatcaagagttacaacaattacaaaccttcccaa 12220701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 12218580 - 12218472
Alignment:
Q  92 actacgttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaac 191  Q
    |||||||||||||||||||| ||||| || ||||||| ||||||||||||| ||| | |||| ||||||||||||| || ||||||||||||||||| ||    
T  12218580 actacgttagccaatacccagacaaagaaaagggcatgaccaccactgctgagtaccaaaaataaagatagcttttctagctttcaaccaacctaaggac 12218481  T
Q  192 aacatcttt 200  Q
    || ||||||    
T  12218480 aatatcttt 12218472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 2871701 - 2871862
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagg 124  Q
    ||||| |||||||||||||||||||||  || |||||||||||||  |||| |||||   |||    |  || |||||||||||||||||||||||||||    
T  2871701 acaagatgtgccttagagactaccacaaaaatcaagagttacaacggttacaaaccaaaacaatagaaaaacattagccaatacccaaacaaacaagagg 2871800  T
Q  125 gcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |  | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  2871801 gtttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 2871862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12531230 - 12531156
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattac 75  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||  |||||||||||||||||||||||||||    
T  12531230 atataacaaagcagtccctagagcataaggtgtgccttagaaactattacaggaaccaagagttacaacaattac 12531156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 28542586 - 28542685
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatc 197  Q
    ||||||||||||||||||||||||||||  | |||||||||||||     | ||||||||   |||||||||| |||||||||| |||||  ||||||||    
T  28542586 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgaaagccaaaaacaaaacaagcttttttagctttcaaccatcctaaagacaacatc 28542685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 187
Target Start/End: Original strand, 35405329 - 35405416
Alignment:
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||| ||||||||||||||||  | | |||||||||||  |  | ||||||||| ||||||||||| |||| | |||||||||    
T  35405329 agccaatactcaaacaaacaagagggtttgatcaccactgctgaattccaaaaacaaaggtagcttttttagcttttagccaacctaa 35405416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 187
Target Start/End: Complemental strand, 412911 - 412833
Alignment:
Q  109 ccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    |||||||||||||||||| | |||||||||| ||  |  | ||||||||| ||| ||||||| |||||| |||||||||    
T  412911 ccaaacaaacaagagggcttgaccaccactgttgaattccaaaaacaaaggtagtttttttagctttcagccaacctaa 412833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 35405252 - 35405297
Alignment:
Q  24 tacaaggtgtgccttagagactaccacaggaaccaagagttacaac 69  Q
    |||||||||| |||||||||||||  ||| ||||||||||||||||    
T  35405252 tacaaggtgtaccttagagactacatcagaaaccaagagttacaac 35405297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 7e-64; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 45421003 - 45421202
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaa-ccatcccaaccagactacgtt 99  Q
    |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||| |||||| ||||||| ||    
T  45421003 atataacaaagcagtccctaaagcacaaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacatt 45421102  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| |  |||||||  |||||||| || ||||||||||||||||| ||||||||||    
T  45421103 agccaatacccaaacaaacaagagggcatgaccaccactgctgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 45421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 186
Target Start/End: Original strand, 33547378 - 33547543
Alignment:
Q  23 gtacaaggtgtgcctt-agagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaa 120  Q
    |||||||||||||||| |||||||||| ||| |||||||||||||||| |||||  || |  |  | ||||  | | |||||||||||||||||||||||    
T  33547378 gtacaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaa 33547477  T
Q  121 gagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  33547478 gagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 33547543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 187
Target Start/End: Complemental strand, 31086287 - 31086105
Alignment:
Q  5 aacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatccca-accagactacgttagcc 103  Q
    |||| ||||||||| | || ||||||||| |||||||||||||  ||| |||||||||||||||| ||||| ||| ||  || | |||| ||| ||||||    
T  31086287 aacagagcagtcccaaaagcacaaggtgtaccttagagactacttcagaaaccaagagttacaacgattacaaac-atgtcacagcagaatacattagcc 31086189  T
Q  104 aatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
     ||| |||||||||||||||||| | |||||||||| ||  || | ||||||||  ||||||||||| |||||||| |||||||    
T  31086188 tatatccaaacaaacaagagggcttgaccaccactgttgtataccaaaaacaaatgtagcttttttagctttcaactaacctaa 31086105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 9949821 - 9949732
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| || || ||||||||| ||||||||||| |||| | |||||||||    
T  9949821 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtgtcaaaaacaaaggtagcttttttagcttttagccaacctaa 9949732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 31594137 - 31594226
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  31594137 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaa 31594226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 13549707 - 13549808
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatc 197  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| ||  | ||||||||| |||||||||||||||| |  ||||||||  ||||||||    
T  13549707 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagtcaacctaaagacaacatc 13549806  T
Q  198 tt 199  Q
    ||    
T  13549807 tt 13549808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 26681390 - 26681553
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcc-caaccagactacgttagccaatacccaaacaaacaagag 123  Q
    |||||||||| |||||||| |||| ||| ||||||||||||||||  |||| ||| |  | ||||   |  || ||||||||||||||||||||||||||    
T  26681390 acaaggtgtgtcttagagattacctcagaaaccaagagttacaacggttacaaacaagacacaactgaaaaacattagccaatacccaaacaaacaagag 26681489  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||  | |||||||||| || ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  26681490 ggtttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaa 26681553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 22052210 - 22052299
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| ||  | ||||||||  ||||||||||| |||| | |||||||||    
T  22052210 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaa 22052299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 43627009 - 43627170
Alignment:
Q  27 aaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagaggg 125  Q
    |||||||||||||||||||||||||  ||||||||||||||||  |||| ||| |     | ||||  | | ||||||||||||||||||||||||||||    
T  43627009 aaggtgtgccttagagactaccacaaaaaccaagagttacaacggttacaaacaaaaaacaacagaaaaacattagccaatacccaaacaaacaagaggg 43627108  T
Q  126 cataaccaccactgctgggtatcgaaaacaaagatagc-ttttttaactttcaaccaaccta 186  Q
      | ||||||||||||| ||  | ||||||||  |||| ||||||| |||||||||||||||    
T  43627109 tttgaccaccactgctgagtcccaaaaacaaatgtagctttttttagctttcaaccaaccta 43627170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 187
Target Start/End: Original strand, 35694142 - 35694305
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    |||| ||||||||||||||||||| ||| ||||||||||||||||  |||| ||| |  |  | ||||  | | |||||||||| |||||||||||||||    
T  35694142 acaaagtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaagacatagcagaaaaacattagccaatatccaaacaaacaagag 35694241  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||  | ||||||||||||| ||  | ||||||||| ||| ||||||| |||||| | |||||||    
T  35694242 ggtttgaccaccactgctgagttccaaaaacaaaggtagtttttttagctttcagctaacctaa 35694305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 32145397 - 32145461
Alignment:
Q  10 agcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaatta 74  Q
    ||||||||| | || ||||||||||||||||| |||||  ||| || ||||||||||||||||||    
T  32145397 agcagtcccgaaagcacaaggtgtgccttagaaactactgcagaaatcaagagttacaacaatta 32145461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7160 - 7359
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaa-ccatcccaaccagactacgtt 99  Q
    ||||||||||||| |||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||| |||||| ||||||| ||    
T  7160 atataacaaagcaatccctaaagcataaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacatt 7259  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||| | ||||||||  |||||||| || ||||||||||||||||| ||||||||||    
T  7260 agccaatacccaaacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 7359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 1e-56; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 7663893 - 7663694
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaa-ccatcccaaccagactacgtt 99  Q
    ||||||||||||| |||||| || | ||||||||||||||||||||| ||||||||||||||||||||||| ||| || ||| |||||| ||||||| ||    
T  7663893 atataacaaagcaatccctaaagcataaggtgtgccttagagactactacaggaaccaagagttacaacaaatacaaaaccaacccaacaagactacatt 7663794  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||||||||||||||||||||||| |||| |||||||||| |||||| | ||||||||  |||||||| || ||||||||||||||||| ||||||||||    
T  7663793 agccaatacccaaacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 7663694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 1121631 - 1121521
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtta 100  Q
    ||||||||||||||||||||||| | ||||||||||||||| ||||||||||   |||||||||||||||||||| ||||||||||||| ||||||||||    
T  1121631 atataacaaagcagtccctagagcataaggtgtgccttagaaactaccacagagtccaagagttacaacaattacaaaccatcccaaccggactacgtta 1121532  T
Q  101 gccaataccca 111  Q
    | |||||||||    
T  1121531 gtcaataccca 1121521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 1121196 - 1121096
Alignment:
Q  103 caatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctttac 202  Q
    |||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||| |||||| ||||||||| |||||||||||||    
T  1121196 caatacccaaacaaacaagagggcatgaccaccactgttgggtaccaaaaacaaagatagcttttttaattttcaatcaacctaaggacaacatctttac 1121097  T
Q  203 c 203  Q
    |    
T  1121096 c 1121096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 3130631 - 3130439
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||||||| ||||| |||| ||||||||||||||| |||||||||| |||||||||||||||||||||||  |  ||||| ||||| |||| |||| |     
T  3130631 atataacaatgcagttcctaaagtacaaggtgtgccgtagagactacaacaggaaccaagagttacaacaa--aacaaccaacccaa-cagagctacatc 3130535  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaaca 195  Q
    |||| ||||||||||| |||||||||||  |||||||||| || ||||| || |||||  ||| ||||||| ||||||||||| ||||| ||||||    
T  3130534 agcctatacccaaacacacaagagggcaagaccaccactgttgagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaaca 3130439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 23279092 - 23279267
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    |||||||||| |||| || | || | ||||||||||||||||||| |||||| |||||| ||||||||||||||| |||||  |  | |||| | || ||    
T  23279092 atataacaaaacagttccgaaagcataaggtgtgccttagagactgccacagaaaccaaaagttacaacaattacaaaccacacacagcagagcaacatt 23279191  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaacttt 175  Q
    | || |||||||||||||||||||||||  |||||||||| |||||| ||||||||||  ||||||||||| ||||    
T  23279192 aacctatacccaaacaaacaagagggcaagaccaccactgttgggtaccgaaaacaaaagtagcttttttaccttt 23279267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 8487612 - 8487450
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    ||||| ||||||| |||||||||| ||| |||||||||||| ||||||||| ||| |  |  ||||||  | | |||| |||||||||||||||||||||    
T  8487612 acaagatgtgcctaagagactacctcagaaaccaagagttataacaattacaaacaaaacacaccagaaaaacattagtcaatacccaaacaaacaagag 8487513  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  8487512 ggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 8487450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 33312906 - 33313071
Alignment:
Q  23 gtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaag 121  Q
    |||||||||||||||||||||||||| |||||| ||||||||| ||| ||||| ||| |  |  | ||||  | | ||||||||| ||||||||||||||    
T  33312906 gtacaaggtgtgccttagagactacctcaggaatcaagagttataacgattacaaacaaaacacaacagaaaatcattagccaatgcccaaacaaacaag 33313005  T
Q  122 agggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||| | ||||||||||||| ||  | ||||||||  || |||||||||||||||||||||||||    
T  33313006 agggcttgaccaccactgctgagtcccaaaaacaaaagtaacttttttaactttcaaccaacctaa 33313071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 12776839 - 12776676
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccat--cccaaccagactacgttagccaatacccaaacaaacaaga 122  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||  |   | ||||   |  || |||||||||||||||||||||||||    
T  12776839 acaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaaaaaaaaacacaacagaaaaacattagccaatacccaaacaaacaaga 12776740  T
Q  123 gggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||| | ||||||||||||| ||  | ||||||||| ||||| ||||| |||||||||||||||    
T  12776739 gggcttgaccaccactgctgagtcccaaaaacaaaggtagctcttttagctttcaaccaaccta 12776676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 47540413 - 47540609
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagact-acgtt 99  Q
    ||||||||| ||||||||||  | |||| ||||||  |||| ||||| |||||||||||||||||||||||  |  ||||| |||||| ||| | || |     
T  47540413 atataacaatgcagtccctaacgcacaaagtgtgctatagatactacaacaggaaccaagagttacaacaa--aacaaccaacccaac-agagttacatc 47540509  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |||||||||||| ||||||||||||| ||| | || |||||  ||||||||||| |||||||||||  |||| ||||||||||    
T  47540510 agcctatacccaaacacacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagttaaggacaacatctt 47540609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 55298131 - 55298294
Alignment:
Q  25 acaaggtgtgcctt-agagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaaga 122  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||| |||||  || |  |  | ||||  | | |||||||||||||||||||||||||    
T  55298131 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 55298230  T
Q  123 gggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  55298231 gggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 55298294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 98 - 186
Target Start/End: Complemental strand, 23874033 - 23873945
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  23874033 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 23873945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 5817834 - 5817637
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||| ||||||||||||| ||| |||||||| |||||||||| | |||||||||||| ||| |||||  |  || || |||||| ||| |||| |    
T  5817834 atataacaatgcagtccctagagcacagggtgtgccatagagactacaaacaggaaccaagaattaaaacaa--aacaaacaacccaac-agagctacat 5817738  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatct 198  Q
     |||| ||||||||||| | |||||||||  ||||||||||||| ||| | || |||||  ||| ||||||| ||||||||||| ||||| |||||||||    
T  5817737 cagcctatacccaaacacataagagggcaagaccaccactgctgagtaccaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatct 5817638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 8655726 - 8655529
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactac-cacaggaaccaagagttacaacaattactaaccatcccaaccagactacgtt 99  Q
    ||||||||| |||| || ||||| |||||||||||| ||||||||||  |||||||||||||||||||||||  |  || || ||||||   ||||| |     
T  8655726 atataacaatgcagcccgtagagcacaaggtgtgccatagagactacaaacaggaaccaagagttacaacaa--aacaaacaacccaacataactacatc 8655629  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |  |||||| |  ||||||||||||| ||| | || |||||  ||||||||||| | ||||||||| ||||| ||||||||||    
T  8655628 agcctatacccaaacacatgagagggtaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatctt 8655529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 20673218 - 20673380
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaac-catcccaaccagactacgttagccaatacccaaacaaacaagag 123  Q
    ||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||  | | ||||   |  || ||||| ||||||||||||||||||||    
T  20673218 acaaggtgtgcctaagagactacctcaggaaccaagagttacaacgattacaaacaaaacacaacataaaaacattagcaaatacccaaacaaacaagag 20673317  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
     || | ||||||||||||| ||  | |||||||||  |||||||||| ||||  |||||||||    
T  20673318 agcttgaccaccactgctgagtcccaaaaacaaaggaagcttttttagctttataccaaccta 20673380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 2630908 - 2631069
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagg 124  Q
    ||||| ||||||  |||||||||| ||  ||||||||||||||||  |||| ||| |  |  | ||||  || |||||||||||| ||||||||||||||    
T  2630908 acaagatgtgccgaagagactacctcataaaccaagagttacaacggttacaaacaaaacacaacagaaaacattagccaatacctaaacaaacaagagg 2631007  T
Q  125 gcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    || | ||||||||||||| ||    ||||||||| ||||||||||| |||||||||||||||    
T  2631008 gcttgaccaccactgctgagtcctaaaaacaaaggtagcttttttagctttcaaccaaccta 2631069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 199
Target Start/End: Complemental strand, 25875236 - 25875146
Alignment:
Q  109 ccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||||||||||| ||||  | |||||||||| || ||  | ||||||||| ||| ||||||| ||||||||||||||||  ||||||||||    
T  25875236 ccaaacaaacaaaagggtttgaccaccactgatgcgtgccaaaaacaaaggtagtttttttagctttcaaccaacctaaagacaacatctt 25875146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 23874108 - 23874063
Alignment:
Q  25 acaaggtgtgcctt-agagactaccacaggaaccaagagttacaac 69  Q
    |||||||||||||| |||||||||| ||| ||||||||||||||||    
T  23874108 acaaggtgtgcctttagagactacctcagaaaccaagagttacaac 23874063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 30168000 - 30167801
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaa-ccatcccaaccagactacgtt 99  Q
    |||||||||||||||||||| || ||||||||||||||||| ||||| ||| ||||||||||||||||||| ||| || ||| |||||| ||||||| ||    
T  30168000 atataacaaagcagtccctaaagcacaaggtgtgccttagaaactactacacgaaccaagagttacaacaaatacaaaaccaacccaacaagactacatt 30167901  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||| |  |||||||  |||||||| || ||||||||||||||||| ||||||||||    
T  30167900 agccaatacccaaacaaacaagagggcatgaccaccactgccgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatctt 30167801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 32004468 - 32004664
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||||||| ||||||||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||  |  ||||| ||||| |||| |||| |     
T  32004468 atataacaatgcagtccctagagcacaacgtgtgccatagagactacaacaggaaccaagagttacaacaa--aacaaccaacccaa-cagagctacatc 32004564  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |||||||||||| ||||||||||||| ||| | || |||||  ||| | ||||| ||||||||||| ||||| ||||||||||    
T  32004565 agcctatacccaaacatacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagttcttttagctttcaaccaagctaaggacaacatctt 32004664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 6177109 - 6176947
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||||||||| ||| |  |  ||||||  | | |||| |||||||||||||||||||||    
T  6177109 acaagatgtgccttagagactacctcagaaaccaagagttacaacaattacaaacaaaacacaccagaaaaacattagtcaatacccaaacaaacaagag 6177010  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  6177009 ggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 6176947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 23601282 - 23601444
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcc-caaccagactacgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||  |||| ||| |  | ||||   |  || ||||||||||||||||||||||||||    
T  23601282 acaaggtgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacataaaaacattagccaatacccaaacaaacaagag 23601381  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | |||||||||| || ||  | ||||||||||||||||||||| |||||||||||||||    
T  23601382 ggcttgaccaccactgttgagtcccaaaaacaaagatagcttttttagctttcaaccaaccta 23601444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 29308917 - 29309078
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagg 124  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||||  |||| ||| |  |  | ||||  || ||| |||||||||||||||||||||||    
T  29308917 acaagatgtgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaacattacccaatacccaaacaaacaagagg 29309016  T
Q  125 gcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    || | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  29309017 gcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 29309078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 2814131 - 2813969
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    |||||||||| ||||||||||||| ||| ||||||||||||||||  |||| ||| |  |  || |||  | | ||||||||||||||||||||||||||    
T  2814131 acaaggtgtgtcttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacactagaaaaacattagccaatacccaaacaaacaagag 2814032  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||||| ||||||| ||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  2814031 ggcatgaccaccattgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 2813969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 199
Target Start/End: Complemental strand, 49732548 - 49732389
Alignment:
Q  38 tagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgttagccaatacccaaacaaacaagagggcataaccacca 136  Q
    |||||||||| ||||||| |||||||||||||||  |  ||||| |||||| ||| |||| | |||| ||||||||||| |||||||||||| |||||||    
T  49732548 tagagactacaacaggaatcaagagttacaacaa--aacaaccaacccaac-agagctacatcagcctatacccaaacacacaagagggcatgaccacca 49732452  T
Q  137 ctgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||||| ||| | || |||||  ||||||||||| ||||||||||| ||||| ||||||||||    
T  49732451 ctgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatctt 49732389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 25873669 - 25873580
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||||||||||||||||||||  | ||||||||||||| ||  | ||||||||||||||||||||| |||||| |||||||||    
T  25873669 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaagatagcttttttagctttcagccaacctaa 25873580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 7146553 - 7146712
Alignment:
Q  27 aaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagggc 126  Q
    |||||||||||||||||||||||||| |||||||||||||||   |||| ||| |   || |   |  || ||||| |||||||||||||||||| |||     
T  7146553 aaggtgtgccttagagactaccacagaaaccaagagttacaatggttacaaacaaaaacagcagaaaaacattagcaaatacccaaacaaacaagggggt 7146652  T
Q  127 ataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
     | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  7146653 ttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 7146712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 38542869 - 38542814
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaac 56  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  38542869 atataacaaagcagtccctagagcacaaggtgtgccttagagactactacaggaac 38542814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 13447967 - 13448158
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||| ||| |||||||||| || |||||||||||| ||||||||||  ||||||||||||||||||| ||  |  ||||| ||||| |||| |||| |     
T  13447967 atataccaatgcagtccctaaagcacaaggtgtgccatagagactacagcaggaaccaagagttacaataa--aacaaccaacccaa-cagagctacatc 13448063  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaaca 195  Q
    | || |||| |||||| ||||||| |||  |||||||||| || ||| | || |||||  ||| ||||||| ||||||||||| ||||| ||||||    
T  13448064 aacctatactcaaacacacaagagagcaagaccaccactgttgagtaccaaacacaaaagtag-ttttttagctttcaaccaagctaaggacaaca 13448158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 199
Target Start/End: Original strand, 9378676 - 9378781
Alignment:
Q  95 acgttagccaatacccaaacaaacaagagggc-ataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaa 193  Q
    ||||||||| || ||||||||||  ||||||| |||||||||| || || ||| | | ||||||| |||||||||||||||| | |||||||||  ||||    
T  9378676 acgttagcctattcccaaacaaaagagagggctataaccaccattgttgtgtaccaataacaaaggtagcttttttaacttttagccaacctaaagacaa 9378775  T
Q  194 catctt 199  Q
    ||||||    
T  9378776 catctt 9378781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 130 - 199
Target Start/End: Complemental strand, 28675454 - 28675385
Alignment:
Q  130 accaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    ||||||||| ||| ||| ||||||||||  |||||||||||||||||||||| |||||  ||||||||||    
T  28675454 accaccactactgcgtaccgaaaacaaaagtagcttttttaactttcaaccagcctaaagacaacatctt 28675385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 31546955 - 31546993
Alignment:
Q  99 tagccaatacccaaacaaacaagagggcataaccaccac 137  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  31546955 tagccaatacccaaacaaacaaaagggcttaaccaccac 31546993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 31778237 - 31778275
Alignment:
Q  99 tagccaatacccaaacaaacaagagggcataaccaccac 137  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  31778237 tagccaatacccaaacaaacaaaagggcttaaccaccac 31778275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 15673334 - 15673496
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgttagccaatacccaaacaaacaagag 123  Q
    ||||||||||| |||||||||||| ||| || |||||||||||||  |||| ||| |  |  |||||| | || ||||||||||||||||||||||||||    
T  15673334 acaaggtgtgcgttagagactacctcagaaatcaagagttacaacgtttacaaacaaaacacaccagaacaacattagccaatacccaaacaaacaagag 15673433  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  15673434 ggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 15673496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 13754983 - 13755136
Alignment:
Q  33 tgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacgttagccaatacccaaacaaacaagagggcataacc 132  Q
    |||||||||||||||| ||| ||||||||||||||||  |||| ||| |  |  | ||||  || ||||||||||||||||||||||||||||  | |||    
T  13754983 tgccttagagactacctcagaaaccaagagttacaacggttacaaacaaaacacaacagaaaacattagccaatacccaaacaaacaagagggtttgacc 13755082  T
Q  133 accactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  13755083 accactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 13755136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 33629586 - 33629777
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    ||||||||| | |||||||| || |||||||||||| |||||||||| ||| |||||||||||||||||||  |  ||||| ||||| |||| |||| |     
T  33629586 atataacaatgtagtccctaaagcacaaggtgtgccatagagactacaacaagaaccaagagttacaacaa--aacaaccaacccaa-cagagctacatc 33629682  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaaca 195  Q
    |||| |||| |||||| |||||||||||| |||||||||| || ||| | || |||||  ||| ||||||| ||||||||||| ||||| ||||||    
T  33629683 agcctatactcaaacacacaagagggcatgaccaccactgttgagtaccaaacacaaaagtag-ttttttagctttcaaccaagctaaggacaaca 33629777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 25 - 187
Target Start/End: Complemental strand, 8873457 - 8873294
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcc-caaccagactacgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||| ||| ||| ||||||||||||  |||| ||| |  | ||||   |  || ||||||||||||||||||||||||||    
T  8873457 acaaggtgtgccttagagactacctcagaaactaagagttacaacggttacaaacaagacacaactgaaaaacattagccaatacccaaacaaacaagag 8873358  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||| | |||||||||| || ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  8873357 ggcttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaa 8873294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 23348097 - 23347935
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaagag 123  Q
    |||||||||||||||||||||||| ||| || | ||||||||||||||||| | | |     || |||  | | |||| |||||||||||||||||||||    
T  23348097 acaaggtgtgccttagagactacctcagaaaacgagagttacaacaattacaatcaaaatacactagaaaaacattagtcaatacccaaacaaacaagag 23347998  T
Q  124 ggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    ||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  23347997 ggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 23347935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 25317437 - 25317538
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatc 197  Q
    |||||||||| |||||||||||||||||| | || |||||||||| ||  | ||||||||| ||| |||||||||||| | |||||||||  ||||||||    
T  25317437 ttagccaatatccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatc 25317536  T
Q  198 tt 199  Q
    ||    
T  25317537 tt 25317538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 26204931 - 26205032
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatc 197  Q
    |||||||||| |||||||||||||||||| | || |||||||||| ||  | ||||||||| ||| |||||||||||| | |||||||||  ||||||||    
T  26204931 ttagccaatatccaaacaaacaagagggcttgacgaccactgctgagttccaaaaacaaaggtagtttttttaactttaagccaacctaaagacaacatc 26205030  T
Q  198 tt 199  Q
    ||    
T  26205031 tt 26205032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 1682528 - 1682664
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgtt 99  Q
    |||| |||| ||||| |||| || |||||||||||| |||||||||| ||| |||||||||||||||||||  |  |||||  |||| |||| |||| |     
T  1682528 atatgacaatgcagtgcctaaagcacaaggtgtgccatagagactactacaagaaccaagagttacaacaa--aacaaccaatccaa-cagagctacatg 1682624  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactg 139  Q
    |||| ||||||||||| |||||||| ||| ||||||||||    
T  1682625 agcctatacccaaacacacaagaggacatgaccaccactg 1682664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 19348857 - 19348925
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttt 166  Q
    |||||||||||||| |||||||||||||  | ||||||||||||| ||  | ||||||||| |||||||    
T  19348857 ttagccaatacccatacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaggtagcttt 19348925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 14003470 - 14003427
Alignment:
Q  25 acaaggtgtgccttagagactaccacaggaaccaagagttacaa 68  Q
    |||||||||||||||||||||||| ||| || ||||||||||||    
T  14003470 acaaggtgtgccttagagactacctcagaaatcaagagttacaa 14003427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 10487559 - 10487362
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactac-cacaggaaccaagagttacaacaattactaaccatcccaaccaga-ctacgt 98  Q
    ||||||||| ||||||||||||| |||||||||||| |||||||||| |||| |||||||||||||||||||  |  || || ||||| |||| |||| |    
T  10487559 atataacaatgcagtccctagagcacaaggtgtgccatagagactacacacatgaaccaagagttacaacaa--aacaaacaacccaa-cagagctacat 10487463  T
Q  99 tagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatct 198  Q
     |||| ||||||||||| | |||||||||  |||||||||| || ||| | || |||||  ||||||||||| ||||||||||| ||||| |||||||||    
T  10487462 cagcctatacccaaacacataagagggcaagaccaccactgttgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatct 10487363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 34858325 - 34858162
Alignment:
Q  25 acaaggtgtgcctt-agagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagacta-cgttagccaatacccaaacaaacaaga 122  Q
    |||||||||||||| |||||||||| ||| |||||||||||||||| |||||  || |  |  | ||||  | | |||||||||||||||||||||||||    
T  34858325 acaaggtgtgcctttagagactacctcagaaaccaagagttacaacgattacatacaaaacacaacagaaaaaccttagccaatacccaaacaaacaaga 34858226  T
Q  123 gggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaaccta 186  Q
    |||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||||||||||||    
T  34858225 gggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaaccta 34858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 6264833 - 6264666
Alignment:
Q  23 gtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattact--aaccatcc-caaccagactacgttagccaatacccaaacaaaca 119  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||| |||||   ||| |  | ||||   |  || ||||||||||||||||||||||    
T  6264833 gtacaaggtgtgccttagagactacctcagaaaccaagagttacaacgattacacaaacaagacacaactgaaaaacattagccaatacccaaacaaaca 6264734  T
Q  120 agagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||  | ||||||||||||| ||  | ||||||||  ||||||||||| ||||||||||||||||    
T  6264733 agagggtttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaa 6264666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 32917900 - 32918001
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatc 197  Q
    ||||||||||||||||||||||||||| | | ||||||||||||| ||  | ||||||||| |||||||||||||||| | |||||||||  ||||||||    
T  32917900 ttagccaatacccaaacaaacaagaggacttgaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatc 32917999  T
Q  198 tt 199  Q
    ||    
T  32918000 tt 32918001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 187
Target Start/End: Original strand, 34480539 - 34480628
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||||||||||||||||||||| | ||||||||||||| ||  | ||||||||| ||||||||||| |||||| |||||||||    
T  34480539 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaa 34480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 187
Target Start/End: Complemental strand, 15500203 - 15500114
Alignment:
Q  98 ttagccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||||||||| |||| |||||||||||  | ||||||||||||| ||  | ||||||||  ||||||||||| |||| | |||||||||    
T  15500203 ttagccaatactcaaataaacaagagggtttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaa 15500114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 13775 - 13610
Alignment:
Q  23 gtacaaggtgtgccttagagactaccacaggaaccaagagttacaacaattactaaccatcccaaccagactacg-ttagccaatacccaaacaaacaag 121  Q
    |||||||||||||||||||||||||| ||  ||| |||||||||||||||||| ||| |  |  ||||||  |   |||| |||||||||||||||||||    
T  13775 gtacaaggtgtgccttagagactacctcaaaaactaagagttacaacaattacaaacaaaacacaccagaaaaatattagtcaatacccaaacaaacaag 13676  T
Q  122 agggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaa 187  Q
    ||||| | ||||||||||||| ||  | |||||||||||| |||||||| |||||||| |||||||    
T  13675 agggcgtgaccaccactgctgagtcccaaaaacaaagataacttttttagctttcaactaacctaa 13610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 12375 - 12322
Alignment:
Q  150 aaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctttacc 203  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  12375 aaaataaagatagcttttttagctttcaaccaacctaaggacaacatctttacc 12322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 135289 - 135092
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccagactacgtt 99  Q
    ||||||||| |||| |||||||| |||||| ||||| |||||||||| | | | |||||| |||||||||||  |  || || ||||||   | ||| |     
T  135289 atataacaatgcagcccctagagcacaaggcgtgccatagagactacaaaccgaaaccaaaagttacaacaa--aacaaacaacccaacataattacatc 135192  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |  ||||||||  ||||||||||||| ||| | || |||||  ||||||||||| | ||||||||| ||||| ||||||||||    
T  135191 agcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatctt 135092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 313116 - 312919
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccagactacgtt 99  Q
    ||||||||| |||| |||||||| |||||| ||||| |||||||||| | | | |||||| |||||||||||  |  || || ||||||   | ||| |     
T  313116 atataacaatgcagcccctagagcacaaggcgtgccatagagactacaaaccgaaaccaaaagttacaacaa--aacaaacaacccaacataattacatc 313019  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |  ||||||||  ||||||||||||| ||| | || |||||  ||||||||||| | ||||||||| ||||| ||||||||||    
T  313018 agcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatctt 312919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 328570 - 328373
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaattactaaccatcccaaccagactacgtt 99  Q
    ||||||||| |||| |||||||| |||||| ||||| |||||||||| | | | |||||| |||||||||||  |  || || ||||||   | ||| |     
T  328570 atataacaatgcagcccctagagcacaaggcgtgccatagagactacaaaccgaaaccaaaagttacaacaa--aacaaacaacccaacataattacatc 328473  T
Q  100 agccaatacccaaacaaacaagagggcataaccaccactgctgggtatcgaaaacaaagatagcttttttaactttcaaccaacctaagaacaacatctt 199  Q
    |||| ||||||||||| |  ||||||||  ||||||||||||| ||| | || |||||  ||||||||||| | ||||||||| ||||| ||||||||||    
T  328472 agcctatacccaaacacatgagagggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatctt 328373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 22866 - 22795
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactacca-caggaaccaagagttacaacaa 71  Q
    |||||||||  |||||||||||| |||||||||| | || ||||||| | ||||||||||||||||||||||    
T  22866 atataacaatacagtccctagagcacaaggtgtgtcatacagactacaaacaggaaccaagagttacaacaa 22795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 48610 - 48545
Alignment:
Q  1 atataacaaagcagtccctagagtacaaggtgtgccttagagactaccacaggaaccaagagttac 66  Q
    ||||||||| ||||||| ||||| ||||  ||||||||||| ||||| ||||||| ||||||||||    
T  48610 atataacaatgcagtccttagagcacaatttgtgccttagaaactacaacaggaatcaagagttac 48545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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