View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_6 (Length: 614)
Name: NF1351_low_6
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 569; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 30 - 602
Target Start/End: Original strand, 2107425 - 2107997
Alignment:
| Q |
30 |
ctaatatatcagaactctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatt |
129 |
Q |
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| T |
2107425 |
ctaatatatcagaactctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatt |
2107524 |
T |
|
| Q |
130 |
tccatttagataattcttttgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagatt |
229 |
Q |
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| T |
2107525 |
tccatttagataattcttttgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagatt |
2107624 |
T |
|
| Q |
230 |
gcatgaattaacgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtg |
329 |
Q |
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| T |
2107625 |
gcatgaattaacgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtg |
2107724 |
T |
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| Q |
330 |
gtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagg |
429 |
Q |
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| T |
2107725 |
gtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgcccactattagcagtttagg |
2107824 |
T |
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| Q |
430 |
gacttaaaaaatgttgtcatgcatgttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaaaacactttgctgtgtga |
529 |
Q |
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| T |
2107825 |
gacttaaaaaatgttgtcatgcatgttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaaaacactttgatgtgtga |
2107924 |
T |
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| Q |
530 |
taatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatatt |
602 |
Q |
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| T |
2107925 |
taatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatatt |
2107997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 34 - 602
Target Start/End: Original strand, 2099250 - 2099821
Alignment:
| Q |
34 |
tatatcagaactctgcactgacttgcagccaaagtttctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaat-ttcc |
132 |
Q |
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||||||||||||||||||||||||||| |||||||| ||||||||||||||| | |||||||||| ||||| ||||||||| ||| |||| ||| || | |
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| T |
2099250 |
tatatcagaactctgcactgacttgcatccaaagttgctttaaaaccaaaaatcatctttgctttgtgtttagttttctgcatcagtagaaaaaaatttc |
2099349 |
T |
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| Q |
133 |
atttagataattcttt-------------tgaacaatctattaacttgtcttacatatgtatttaatcgatcttaaaacttttttgtagacggtcaagtt |
219 |
Q |
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| T |
2099350 |
atttagataattttttgggagaaatattttgaacaatctattaacttgtcttaaatctgtatttaattgatcttaaac--tttatgtagatggtcaagtt |
2099447 |
T |
|
| Q |
220 |
caagaagattgcatgaattaacgatcatccgacggcatgccactgtcaaaaactattggcaactatgttacatttatgtctagcaa-------gtacttc |
312 |
Q |
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| T |
2099448 |
caagaagatcgcatgaattaacgatcatctgacagcatgccactgtcaaaaactattggcaactatgttacatttctgtctagcaactagtaagtactac |
2099547 |
T |
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| Q |
313 |
agtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgtaatattgtaaatttgaacatgcctaatgtgtagatgccc |
412 |
Q |
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| T |
2099548 |
agtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatgttgtttgtaatattgtaaatttgaacatgcccaatgtgtagatgccc |
2099647 |
T |
|
| Q |
413 |
actattagcagtttagggacttaaaaaatgttgtcatgcatgttgtttggatcttatatatgcacatttctaaatttctattttctatgttcatctgaaa |
512 |
Q |
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|| ||||||||||||||||||||||| | || |||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||||||| |
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| T |
2099648 |
accattagcagtttagggacttaaaa-----tttctgtcatgttgtttggatct--tatgtgcccatttc--aatttctattttctatgttcatctgaaa |
2099738 |
T |
|
| Q |
513 |
aacactttgctgtgtgataatcactatgaatgaaggtgatagatgttatttatgaccccaaaaagaagcttcattttgatacattatatt |
602 |
Q |
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| T |
2099739 |
aattctttgctgtgtgataatcactatgaat---ggtgatagatg----ttatgaccccaaaaagaagcttcattttgatacattatatt |
2099821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 174 - 397
Target Start/End: Original strand, 2089119 - 2089338
Alignment:
| Q |
174 |
atatgtatttaatcgatcttaaaacttttttgtagacggtcaagttcaagaagattgcatgaattaacgatcatccgacggcatgccactgtcaaaaact |
273 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||| ||||||||| |||||||| ||||||||||| | |||| ||| |||||||||||||||||||| |
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| T |
2089119 |
atatgtagttaatggatcttaaac--tttttgtagatggtcaagttgaagaagatcgcatgaattaatgttcatatgacagcatgccactgtcaaaaact |
2089216 |
T |
|
| Q |
274 |
attggcaactatgttacatttatgtctagcaagtacttcagtttagcaaattggtggtttcacatgtgaactggcatgtcaaaggtcaaatattgtttgt |
373 |
Q |
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|||||||||||||||| ||| |||||| |||||| || ||||||| ||| ||||||| | |||||| | ||||||||||||||||||||||||||| |
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| T |
2089217 |
attggcaactatgttatctttctgtctaacaagta--acaatttagcacattagtggttttatatgtgaccatgcatgtcaaaggtcaaatattgtttgt |
2089314 |
T |
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| Q |
374 |
aatattgtaaatttgaacatgcct |
397 |
Q |
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| T |
2089315 |
aatattgtaaatttgaacatgcct |
2089338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 2055168 - 2055237
Alignment:
| Q |
71 |
ctttaaaaccaaaaagcctctttgctttttgtttggttttctgcttcaatagataaatttccatttagat |
140 |
Q |
| |
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|||| ||||| |||||| |||||||||| ||||||||||||| |||||| |||| |||| ||||||||| |
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| T |
2055168 |
ctttgaaaccgaaaagcatctttgctttgtgtttggttttctatttcaattgatatattttcatttagat |
2055237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 546
Target Start/End: Original strand, 2089374 - 2089427
Alignment:
| Q |
493 |
ttttctatgttcatctgaaaaacactttgctgtgtgataatcactatgaatgaa |
546 |
Q |
| |
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||||||||||||||||||||||| ||||||| |||||| ||||| |||| |||| |
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| T |
2089374 |
ttttctatgttcatctgaaaaactctttgctatgtgatgatcaccatgactgaa |
2089427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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