View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1351_low_60 (Length: 245)
Name: NF1351_low_60
Description: NF1351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1351_low_60 |
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| [»] scaffold0045 (3 HSPs) |
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| [»] scaffold0457 (1 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 25169 - 25354
Alignment:
| Q |
1 |
taactggtgtttcagggacacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgg |
100 |
Q |
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| T |
25169 |
taactggtgtttcaggggcacccgttagcatgaccttattataattataacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgg |
25268 |
T |
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| Q |
101 |
gatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
186 |
Q |
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| T |
25269 |
gatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatggatgggttgatgcaaattgaagatgatgatg |
25354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 59 - 180
Target Start/End: Original strand, 39821 - 39945
Alignment:
| Q |
59 |
cttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaa---acaattgatctaatg |
155 |
Q |
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| T |
39821 |
cttaaaattttagtgtagaagaaagcttgaggacattttttggatggagttaggtaaaagaaagaatgaaaataaggtgaaaagtacaagtgatctaatg |
39920 |
T |
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| Q |
156 |
gatgggttgatgcaaattgaagatg |
180 |
Q |
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| T |
39921 |
gatgggttgatgcaaattgaagatg |
39945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 32435 - 32558
Alignment:
| Q |
57 |
tacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattgatctaatgg |
156 |
Q |
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| T |
32435 |
tactcaaaatttcagtgtagaagaaagttggaggacatcttttggatggaattagagaaaagaaaagctgaaaataaggttgaaacaagtgatctaatgg |
32534 |
T |
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| Q |
157 |
atgggttgatgcaaattgaagatg |
180 |
Q |
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| T |
32535 |
atgggttgatgcaaattgaagatg |
32558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0457 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0457
Description:
Target: scaffold0457; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 186
Target Start/End: Complemental strand, 5008 - 4870
Alignment:
| Q |
48 |
taacacatgtacttaaaatttcagtgtagaagaaagcttgatgactttttcgggatggaattagataacagaaagaataaagataaggtggaaacaattg |
147 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5008 |
taacacatttaattaaaatttcagtgtagaagaaagcttgatgactttttctggattgaaatagataacagaaaaaataaagataaggtggaaacaattg |
4909 |
T |
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| Q |
148 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
186 |
Q |
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| T |
4908 |
atctaatggatgggttgatgcaaattgaagatgatgatg |
4870 |
T |
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