View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13520_low_1 (Length: 490)
Name: NF13520_low_1
Description: NF13520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13520_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 466
Target Start/End: Complemental strand, 36597150 - 36596689
Alignment:
| Q |
13 |
atcatcaagagaaaagaagaatgtttattatttannnnnnnggtagaatagaatgtttaaataataactgaataatttgtcgtgcatatattatacatga |
112 |
Q |
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| T |
36597150 |
atcatcaagagaaaagaagaatgtttattatttatttttttggtagaatagaatgtttaaataataactgaataatttgttgtgcatatattatacatga |
36597051 |
T |
|
| Q |
113 |
aatatgtacttttctttgcactccttacgtgtaaagctgaagatgactcaccgtgaaaaaccatgaataaattcgtgagtagccacctacttacttctat |
212 |
Q |
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| T |
36597050 |
aatatgtacttttctttgcactccttacgtgtaaagttgaagatgactcaccgtgaaaaaccatgaataaattcgtgagtagccacctacttacttctat |
36596951 |
T |
|
| Q |
213 |
tgcatgaatggacaaagtcaagcttctagttctagattcacattcaaaccaaattcgtactccattaattaatta----ggagctggat----atatcat |
304 |
Q |
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| T |
36596950 |
tgcatgaatggacaaagtcaagcttctagttctagattcacattcaaaccaaattcgtactacattaattaattaattaggagctggatggatatatcat |
36596851 |
T |
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| Q |
305 |
ctacaaatatctagtatactacttagagtgtattgagagattttgagtgct-nnnnnnnnnttaatgtag-ttacccacattgagaggttggaaactaag |
402 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
36596850 |
ctacaaatatctagtatactacttagagtgtatt--gagattttgagtgctaaataaaaaattaatgtagtttacccacattgagaggttggaaactaag |
36596753 |
T |
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| Q |
403 |
aaatttgaaagnnnnnnnnggttaactagttaattaatgttgtgtaatttggacgtgctgttag |
466 |
Q |
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||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
36596752 |
aaatttgaaagaaaaaaaaggttaactaattaattaatgttgtgtaatttggacgtgcggttag |
36596689 |
T |
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