View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13520_low_2 (Length: 490)
Name: NF13520_low_2
Description: NF13520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13520_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 138 - 473
Target Start/End: Complemental strand, 35095881 - 35095546
Alignment:
| Q |
138 |
ccttcactatattttattattatggcaccatcattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagatt |
237 |
Q |
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| T |
35095881 |
ccttcactatattttattattatggcaccatcattcttcatcactttcttcttttctattaatctcatcaacattgcttattgtatttctgacatagatt |
35095782 |
T |
|
| Q |
238 |
ctctccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggc |
337 |
Q |
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| T |
35095781 |
ctctccttaaatttaaaaactctcttcaaaacaccgacgttgcattatcttcatggaatacatccatgcctccatgtaatgctgataatgcaaattgggc |
35095682 |
T |
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| Q |
338 |
gggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtat |
437 |
Q |
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| T |
35095681 |
gggcgttctttgttacaaaggacatgtttggggatttaaactcgaaaacatgaaccttaaaggcaacattgacatcgattccatcaaggatttaccgtat |
35095582 |
T |
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| Q |
438 |
atcagaaccattagcttaatgaacaaccaattcgat |
473 |
Q |
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| T |
35095581 |
atcagaaccattagcttaatgaacaaccaattcgat |
35095546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 35096018 - 35095932
Alignment:
| Q |
1 |
ttccatctctctccaccttccattgctgttcttgatcaacctcagtaacatctcatcttccttctatcgctgcacgccgcaccttaa |
87 |
Q |
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| T |
35096018 |
ttccatctctctccaccttccatagctgttcttgatcaacctcagtaacatctcatcttccttctagcgctgcacgccgcaccttaa |
35095932 |
T |
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