View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13520_low_5 (Length: 389)

Name: NF13520_low_5
Description: NF13520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13520_low_5
NF13520_low_5
[»] chr6 (23 HSPs)
chr6 (1-351)||(27702888-27703238)
chr6 (1-145)||(26852478-26852622)
chr6 (142-346)||(27714575-27714797)
chr6 (145-227)||(26627314-26627396)
chr6 (145-227)||(26733291-26733373)
chr6 (265-346)||(26627393-26627474)
chr6 (265-346)||(26733370-26733451)
chr6 (1-86)||(27661814-27661899)
chr6 (1-70)||(27079155-27079224)
chr6 (1-83)||(26059701-26059783)
chr6 (1-83)||(26079671-26079753)
chr6 (7-83)||(25487058-25487134)
chr6 (198-244)||(27656626-27656672)
chr6 (321-379)||(26852646-26852706)
chr6 (204-251)||(26660163-26660210)
chr6 (204-251)||(26766134-26766181)
chr6 (1-58)||(31288270-31288325)
chr6 (1-38)||(25514503-25514540)
chr6 (1-38)||(26146663-26146700)
chr6 (204-249)||(26963360-26963405)
chr6 (144-185)||(27661496-27661537)
chr6 (271-299)||(26889472-26889500)
chr6 (204-244)||(28783207-28783247)
[»] scaffold0349 (1 HSPs)
scaffold0349 (142-346)||(17147-17369)
[»] chr4 (2 HSPs)
chr4 (54-86)||(18651932-18651964)
chr4 (205-249)||(18727511-18727555)


Alignment Details
Target: chr6 (Bit Score: 315; Significance: 1e-177; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 27703238 - 27702888
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaagattttctggattatgtt 100  Q
    |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27703238 ttgattaatttctgtatatagtcaattacaaattcgttgtttctagttggagaagttattcaaatgatgatacatgatttaagattttctggattatgtt 27703139  T
Q  101 tgtgcaatcttaaaatattgtttctatttacatttggggatgcttataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatttggg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27703138 tgtgcaatcttaaaatattgtttctatttacatttggggatgcttataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatatggg 27703039  T
Q  201 attttgaatggaccttttgagtgaaatagttaatagcctaaacaaagtatttggattttagaataaattcaacgtgattgcaattgaaacatgatacata 300  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  27703038 attttgaatggaccttttgagtgaaataattaataggctaaacaaagtagttggattttagaataaatttaacgtgattgcaattgaaacatgatacata 27702939  T
Q  301 gttgacgttccactaacttataagcacgcaaaaggcttacagtgatttata 351  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  27702938 gttgacgttccactaacttataagcacgcaaaaggcttacagtgatatata 27702888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26852478 - 26852622
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaagattttctggattatgtt 100  Q
    |||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||| ||||||| | ||||||| | ||| |||||    
T  26852478 ttgattaatttctgtatatagtcaattgcaaattcgttgtttctagttggagaagtttttcaaatgatgagacatgatgtgagattttgttgatgatgtt 26852577  T
Q  101 tgtgcaatcttaaaatattgtttctatttacatttggggatgctt 145  Q
    |||||| ||||||||||||||||| ||||||||||| ||||||||    
T  26852578 tgtgcactcttaaaatattgtttcaatttacatttgaggatgctt 26852622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 142 - 346
Target Start/End: Complemental strand, 27714797 - 27714575
Alignment:
Q  142 gcttataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatttgggattttgaatggaccttttgagtgaaatagttaatagcctaa 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   |||||||||||||||||| |||||||| |||||||||||||    
T  27714797 gcttataaagttgacatttgatgttgaattcttcacgagttattgtatcttaatgtcaaattttgaatggaccttttcagtgaaatggttaatagcctaa 27714698  T
Q  242 acaaagtatttggatttt----------agaat-aaattcaacgtgattgcaa-------ttgaaacatgatacatagttgacgttccactaacttataa 323  Q
    || ||||| |||||||||           |||| ||||| ||||| |||||||       ||||||||||||||||| ||||| ||||||||||||||||    
T  27714697 actaagtacttggatttttaactttttatgaatgaaatttaacgtcattgcaattgaaatttgaaacatgatacataattgacattccactaacttataa 27714598  T
Q  324 gcacgcaaaaggcttacagtgat 346  Q
    |||||||||||| ||||||||||    
T  27714597 gcacgcaaaaggtttacagtgat 27714575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 26627314 - 26627396
Alignment:
Q  145 tataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatttgggattttgaatggaccttttgagtgaaat 227  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||    
T  26627314 tataaagtttacatttgatgttgaattcttcataagttattgtatcttgatgtgggattttaaatggaccttttgagtgaaat 26627396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 26733291 - 26733373
Alignment:
Q  145 tataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatttgggattttgaatggaccttttgagtgaaat 227  Q
    ||||||||| ||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||||    
T  26733291 tataaagtttacatttgatgttgaattcttcataagttattgtatcttgatgtgggattttaaatggaccttttgagtgaaat 26733373  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 26627393 - 26627474
Alignment:
Q  265 aaattcaacgtgattgcaattgaaacatgatacatagttgacgttccactaacttataagcacgcaaaaggcttacagtgat 346  Q
    ||||| ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||    
T  26627393 aaatttaacgtcattgccattgaaacatgatacatagttgatattccactaacttataagcacgcagaaggtttacagtgat 26627474  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 265 - 346
Target Start/End: Original strand, 26733370 - 26733451
Alignment:
Q  265 aaattcaacgtgattgcaattgaaacatgatacatagttgacgttccactaacttataagcacgcaaaaggcttacagtgat 346  Q
    ||||| ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |||| ||||||||||    
T  26733370 aaatttaacgtcattgccattgaaacatgatacatagttgatattccactaacttataagcacgcagaaggtttacagtgat 26733451  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 27661899 - 27661814
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaagatt 86  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||  | |||| |||| ||||||| |||||||    
T  27661899 ttgattaatttctgtatatagtcaattacaaattcattgtttatagatggagaagttgcttaaatcatgagacatgatgtaagatt 27661814  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27079155 - 27079224
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatga 70  Q
    |||||||||||||||||||| ||||||| |||||  ||||||||||||||| |||||||| |||||||||    
T  27079155 ttgattaatttctgtatatattcaattacaaatttgttgtttctagttggacaagttttttaaatgatga 27079224  T

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Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26059701 - 26059783
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaag 83  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||| | |||  |||| ||||||| ||||    
T  26059701 ttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26059783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 26079671 - 26079753
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaag 83  Q
    ||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||||||| | |||  |||| ||||||| ||||    
T  26079671 ttgattaatttctgtatgtagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 26079753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 25487058 - 25487134
Alignment:
Q  7 aatttctgtatatagtcaattaaaaattcattgtttctagttggagaagtttttcaaatgatgatacatgatttaag 83  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||||||||| | |||  |||| ||||||| ||||    
T  25487058 aatttctgtatatagtcagttacaaattcaatgtttctagttggagaagtttcttaaaccatgagacatgatgtaag 25487134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 27656672 - 27656626
Alignment:
Q  198 gggattttgaatggaccttttgagtgaaatagttaatagcctaaaca 244  Q
    ||||||||||||||| ||||||| |||||||||||||||||||||||    
T  27656672 gggattttgaatggagcttttgactgaaatagttaatagcctaaaca 27656626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 379
Target Start/End: Original strand, 26852646 - 26852706
Alignment:
Q  321 taagcacgcaaaaggcttacagtgatttatatgtttagcttat--atatctatcgtctctg 379  Q
    ||||||||||||||| |||||||||| || ||| |||||||||  ||||||||||||||||    
T  26852646 taagcacgcaaaaggtttacagtgatataaatgcttagcttatacatatctatcgtctctg 26852706  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 26660163 - 26660210
Alignment:
Q  204 ttgaatggaccttttgagtgaaatagttaatagcctaaacaaagtatt 251  Q
    |||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  26660163 ttgaatcgatcttttgagtgaaatagttagtagcctaaacacagtatt 26660210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 204 - 251
Target Start/End: Original strand, 26766134 - 26766181
Alignment:
Q  204 ttgaatggaccttttgagtgaaatagttaatagcctaaacaaagtatt 251  Q
    |||||| || ||||||||||||||||||| ||||||||||| ||||||    
T  26766134 ttgaatcgatcttttgagtgaaatagttagtagcctaaacacagtatt 26766181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31288270 - 31288325
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcattgtttctagttggagaagttt 58  Q
    ||||||||||||||||||   |||||||  |||||||||||||||| |||||||||||    
T  31288270 ttgattaatttctgtatac--tcaattacgaattcattgtttctagatggagaagttt 31288325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25514503 - 25514540
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcatt 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  25514503 ttgattaatttctgtatatagtcagttacaaattcatt 25514540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26146663 - 26146700
Alignment:
Q  1 ttgattaatttctgtatatagtcaattaaaaattcatt 38  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  26146663 ttgattaatttctgtatatagtcagttacaaattcatt 26146700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 26963360 - 26963405
Alignment:
Q  204 ttgaatggaccttttgagtgaaatagttaatagcctaaacaaagta 249  Q
    ||||||||| ||||||||| || |||||||||||||||||| ||||    
T  26963360 ttgaatggatcttttgagttaagtagttaatagcctaaacacagta 26963405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 27661537 - 27661496
Alignment:
Q  144 ttataaagttgacatttgatgttgaattcttcatgagttatt 185  Q
    |||||||||||||||| | ||||||| |||||||||||||||    
T  27661537 ttataaagttgacattaggtgttgaagtcttcatgagttatt 27661496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 299
Target Start/End: Original strand, 26889472 - 26889500
Alignment:
Q  271 aacgtgattgcaattgaaacatgatacat 299  Q
    |||||||||||||||||||||||||||||    
T  26889472 aacgtgattgcaattgaaacatgatacat 26889500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 28783207 - 28783247
Alignment:
Q  204 ttgaatggaccttttgagtgaaatagttaatagcctaaaca 244  Q
    ||||||||| ||||| ||| |||||||||||||||||||||    
T  28783207 ttgaatggatcttttcagttaaatagttaatagcctaaaca 28783247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 142 - 346
Target Start/End: Original strand, 17147 - 17369
Alignment:
Q  142 gcttataaagttgacatttgatgttgaattcttcatgagttattgtatcttaatttgggattttgaatggaccttttgagtgaaatagttaatagcctaa 241  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |   |||||||||||||||||| |||||||| |||||||||||||    
T  17147 gcttataaagttgacatttgatgttgaattcttcacgagttattgtatcttaatgtcaaattttgaatggaccttttcagtgaaatggttaatagcctaa 17246  T
Q  242 acaaagtatttggatttt----------agaat-aaattcaacgtgattgcaa-------ttgaaacatgatacatagttgacgttccactaacttataa 323  Q
    || ||||| |||||||||           |||| ||||| ||||| |||||||       ||||||||||||||||| ||||| ||||||||||||||||    
T  17247 actaagtacttggatttttaactttttatgaatgaaatttaacgtcattgcaattgaaatttgaaacatgatacataattgacattccactaacttataa 17346  T
Q  324 gcacgcaaaaggcttacagtgat 346  Q
    |||||||||||| ||||||||||    
T  17347 gcacgcaaaaggtttacagtgat 17369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 18651964 - 18651932
Alignment:
Q  54 agtttttcaaatgatgatacatgatttaagatt 86  Q
    ||||||||||||||||| |||||||||||||||    
T  18651964 agtttttcaaatgatgagacatgatttaagatt 18651932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 249
Target Start/End: Complemental strand, 18727555 - 18727511
Alignment:
Q  205 tgaatggaccttttgagtgaaatagttaatagcctaaacaaagta 249  Q
    |||||| | ||||||||||||| ||||||||||||||||| ||||    
T  18727555 tgaatgcatcttttgagtgaaaaagttaatagcctaaacacagta 18727511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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