View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13520_low_6 (Length: 357)
Name: NF13520_low_6
Description: NF13520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13520_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 342
Target Start/End: Complemental strand, 32867009 - 32866687
Alignment:
| Q |
19 |
atcacatcaaaataaataaaataatcttgaattaccaaaaggcagtaaaattaaagaaacttgttgatgtaagcatgaaagcaattgagcctgctgcaaa |
118 |
Q |
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| T |
32867009 |
atcacatcaaaataaataaa-taatcttgaattaccaaaaggcagtaaaattaaagaaacttgatgatgaaaccatgaaagcaattgagcctgctgcaaa |
32866911 |
T |
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| Q |
119 |
aatgaactgtgacaacctcagaatcaaaccaaggacagtacctggtgtcccaggaaaatccttcatctttctctcccaaatggtacaaactttaacatcc |
218 |
Q |
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| T |
32866910 |
aatgaactgtgacaacctcagaatcaaaccaaggacagtacctggtgtcccaggaaaatccttcatctttctctcccaaatggtacaaactttaacatcc |
32866811 |
T |
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| Q |
219 |
actttccactctaacaaaaacaaattttggtgatgatatgggaaaattggaatctggggtgagcataatttacataaatgataaaaccaaccaaaagaga |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
32866810 |
actttccactctaacaaaaacaaattttggtgatgatatgggaaaattggaatctggggtgagcataatttacataaatgataaaatcaaccaaaagaga |
32866711 |
T |
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| Q |
319 |
atgaaaaaggttaggtgtcaaatg |
342 |
Q |
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| T |
32866710 |
atgaaaaaggttaggtgtcaaatg |
32866687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 32899560 - 32899410
Alignment:
| Q |
44 |
cttgaattaccaaaaggcagtaaaattaaagaaacttgttgatgtaagcatgaaagcaattgagcctgctgcaaaaatgaactgtgacaacctcagaatc |
143 |
Q |
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| T |
32899560 |
cttgaattaccaaaaagctgtaatatccatgaaacttgttgttgtaaccatgtaaccaattgacagcgtagcaaaaatgaactgtgacatcctcagaatc |
32899461 |
T |
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| Q |
144 |
aaaccaaggacagtacctggtgtcccaggaaaatccttcatctttctctcc |
194 |
Q |
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| T |
32899460 |
agaccaaggacagtacctggtgtcccaggaaactccttcatatttatctcc |
32899410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 188
Target Start/End: Original strand, 16324697 - 16324788
Alignment:
| Q |
97 |
aagcaattgagcctgctgcaaaaatgaactgtgacaacctcagaatcaaaccaaggacagtacctggtgtcccaggaaaatccttcatcttt |
188 |
Q |
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|||||||||| || | ||||||||||||||||||| ||| |||||||||||||| |||||||| ||||| |||| |||| ||||||||| |
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| T |
16324697 |
aagcaattgaaccagtagcaaaaatgaactgtgacatcctaagaatcaaaccaagaacagtaccaggtgtaccagagaaatttttcatcttt |
16324788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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