View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13520_low_8 (Length: 286)

Name: NF13520_low_8
Description: NF13520
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13520_low_8
NF13520_low_8
[»] chr3 (3 HSPs)
chr3 (5-159)||(6079191-6079343)
chr3 (7-84)||(11028675-11028752)
chr3 (224-260)||(6079090-6079126)
[»] chr6 (3 HSPs)
chr6 (5-93)||(19215363-19215449)
chr6 (226-262)||(13549165-13549201)
chr6 (5-63)||(13548905-13548963)
[»] scaffold0017 (2 HSPs)
scaffold0017 (5-88)||(39144-39228)
scaffold0017 (120-159)||(39286-39325)
[»] chr1 (1 HSPs)
chr1 (5-66)||(19190469-19190530)
[»] chr2 (1 HSPs)
chr2 (5-88)||(13652915-13652999)


Alignment Details
Target: chr3 (Bit Score: 101; Significance: 4e-50; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 159
Target Start/End: Complemental strand, 6079343 - 6079191
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaagnnnnnnnnnnn 104  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||               
T  6079343 tatacttgagtaacacaaagtaaatatcaaataagtccagaggtacaaaacataaaaaattgtgtctttatttataggtatataggaag--aaaaaaaaa 6079246  T
Q  105 ccaaattattttctttgttcatcatctctatttacatcagactttcattttctac 159  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6079245 ccaaattattttctttgttcatcatctctatttacatcacactttcattttctac 6079191  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 11028675 - 11028752
Alignment:
Q  7 tacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggta 84  Q
    |||||||||||||||||| ||||||||||||||||  | |||||||| |||||||||||| |||||||||||||||||    
T  11028675 tacttgagtaacacaaagcaaatatcaaataagtcgagtggtacaaagcacaaaaaattgggtctttatttataggta 11028752  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 260
Target Start/End: Complemental strand, 6079126 - 6079090
Alignment:
Q  224 tgtaaacaaacctctctctctccaaaaaccttatgcc 260  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6079126 tgtaaacaaccctctctctctccaaaaaccttatgcc 6079090  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 19215363 - 19215449
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacacaaaaaattgtgtctttatttataggtatataggaag 93  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  19215363 tatacttgagtaacacaaagtaaatatcatataagtccagaggtac-aaacac-aaaaattgtgtctttatttataggtatataggaag 19215449  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 262
Target Start/End: Original strand, 13549165 - 13549201
Alignment:
Q  226 taaacaaacctctctctctccaaaaaccttatgcccc 262  Q
    |||||||||||||||||||||||||||||||||||||    
T  13549165 taaacaaacctctctctctccaaaaaccttatgcccc 13549201  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 63
Target Start/End: Original strand, 13548905 - 13548963
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacacaaaaaa 63  Q
    ||||||||||||||||||||  ||||| |||||||| | ||||||||||| ||||||||    
T  13548905 tatacttgagtaacacaaagccaatattaaataagtacagaggtacaaaatacaaaaaa 13548963  T

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Target: scaffold0017 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 39144 - 39228
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccg-gaggtacaaaacacaaaaaattgtgtctttatttataggtatata 88  Q
    |||||||||||||||||||| ||||||| |||||||||  |||||||||||||||||||| || ||||||||||||| |||||||    
T  39144 tatacttgagtaacacaaagcaaatatctaataagtccaagaggtacaaaacacaaaaaaatgggtctttatttataagtatata 39228  T

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Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 39286 - 39325
Alignment:
Q  120 tgttcatcatctctatttacatcagactttcattttctac 159  Q
    |||||||||||||||||||||||| ||||||| |||||||    
T  39286 tgttcatcatctctatttacatcacactttcaatttctac 39325  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 66
Target Start/End: Complemental strand, 19190530 - 19190469
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacacaaaaaattg 66  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||    
T  19190530 tatacttgagtaacacaaagcaaatatcaaataagtccagatgtacaaagcacaaaaaattg 19190469  T

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Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 13652915 - 13652999
Alignment:
Q  5 tatacttgagtaacacaaaggaaatatcaaataagtccggaggtacaaaacac-aaaaaattgtgtctttatttataggtatata 88  Q
    |||||||||||||||||||| ||||||||||||||||   ||||||||  ||| ||||||||| |||||||||||||| ||||||    
T  13652915 tatacttgagtaacacaaagcaaatatcaaataagtcgaaaggtacaatgcacaaaaaaattgggtctttatttatagttatata 13652999  T

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