View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13521_high_4 (Length: 319)

Name: NF13521_high_4
Description: NF13521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13521_high_4
NF13521_high_4
[»] chr1 (3 HSPs)
chr1 (41-142)||(38209904-38210007)
chr1 (249-319)||(38210064-38210134)
chr1 (176-223)||(38210019-38210066)


Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 41 - 142
Target Start/End: Original strand, 38209904 - 38210007
Alignment:
Q  41 acaaagaaggtactagtaacttgggatttgattctcggtagtcagcatgcacgtttg--taaaccaatttgggaataaaattgtgtcaagtcatttgtat 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||    
T  38209904 acaaagaaggtactagtaacttgggatttgattctcggtagtcagcatgcacgtttgtttcaaccaatttgggaataaaattgtgtcaagtcatttgtat 38210003  T
Q  139 acta 142  Q
    ||||    
T  38210004 acta 38210007  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 249 - 319
Target Start/End: Original strand, 38210064 - 38210134
Alignment:
Q  249 atctacaattgttcataacaacaattctaaacgttgtgaaattgtttagaattgcacttatctaaaaactc 319  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38210064 atctacaattgttctaaacaacaattctaaacgttgtgaaattgtttagaattgcacttatctaaaaactc 38210134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 38210019 - 38210066
Alignment:
Q  176 actaaaactccgatcaagatcccatgtaacaaccgcacacggtacatc 223  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||    
T  38210019 actaaaactccgatcaggatcccatgtaacaaccgcacacggtacatc 38210066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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