View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13521_low_4 (Length: 368)
Name: NF13521_low_4
Description: NF13521
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13521_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 14812918 - 14812581
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812918 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
14812821 |
T |
|
| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaattccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812820 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaattccat |
14812723 |
T |
|
| Q |
218 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812722 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
14812623 |
T |
|
| Q |
318 |
aacgaagtagtgtggaaattattcttgacaaggtgatgatgt |
359 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14812622 |
aaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
14812581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 15259913 - 15259576
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259913 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
15259816 |
T |
|
| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaattccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259815 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaattccat |
15259718 |
T |
|
| Q |
218 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259717 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
15259618 |
T |
|
| Q |
318 |
aacgaagtagtgtggaaattattcttgacaaggtgatgatgt |
359 |
Q |
| |
|
|| ||| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15259617 |
aaggaaatagtgaggaaattattcttgacaaggtgatgatgt |
15259576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 17521262 - 17521599
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521262 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
17521359 |
T |
|
| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataagtatgatatagtatattaaacttggcatttaatcatgatgaagaattccat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521360 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgata--gtatattaaacttggcatttaatcatgatgaagaattccat |
17521457 |
T |
|
| Q |
218 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521458 |
ggagtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcg |
17521557 |
T |
|
| Q |
318 |
aacgaagtagtgtggaaattattcttgacaaggtgatgatgt |
359 |
Q |
| |
|
|| ||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
17521558 |
aaggaaatagtgaggaaattattcttgacaaggtggtgatgt |
17521599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University