View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13522_high_2 (Length: 245)
Name: NF13522_high_2
Description: NF13522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13522_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 17 - 229
Target Start/End: Complemental strand, 1935410 - 1935198
Alignment:
| Q |
17 |
tgtgttaagtagtaaacctagtttaaactggnnnnnnnngttgagatataatctaatcaatgtctctagtattatctatagatggtactgatatattata |
116 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1935410 |
tgtgttaagtagtaaacctagtttaaaatggttttttttgttgagatataatctaatcaatgtctctagtattatctatagatggtactgatatattata |
1935311 |
T |
|
| Q |
117 |
cagctgttgtgattggtctttgataacaatataccatggataaattgttatcatatttctttatgccataatttatatttatgtctttatttggtccatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1935310 |
cagctgttgtgattggtctttgataacaatataccatggataaattgttatcatatttctttatgccataatttatatttatgtctttatttggtccatc |
1935211 |
T |
|
| Q |
217 |
aacgtgtgataga |
229 |
Q |
| |
|
||||||||||||| |
|
|
| T |
1935210 |
aacgtgtgataga |
1935198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 209
Target Start/End: Complemental strand, 2721389 - 2721280
Alignment:
| Q |
102 |
tactgatatattatacagctgttgtgattggtctttgataacaatatac--catggataaattgttatcatatttctttatgccataattta-tatttat |
198 |
Q |
| |
|
|||| |||||||||||||| ||| ||| ||| ||||||||||||| || ||||||| || ||||||| ||||||||||||||||||| || ||||||| |
|
|
| T |
2721389 |
tacttatatattatacagc-gttatgactggactttgataacaatgtaaatcatggatcaactgttatcgtatttctttatgccataatgtattatttat |
2721291 |
T |
|
| Q |
199 |
gtctttatttg |
209 |
Q |
| |
|
|| |||||||| |
|
|
| T |
2721290 |
gtatttatttg |
2721280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 2716682 - 2716623
Alignment:
| Q |
153 |
tggataaattgttatcatatttctttatgccataattta-tatttatgtctttatttggt |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| |
|
|
| T |
2716682 |
tggatcaattgttatcatatttctttatgccataatatattagttatgtatttatttggt |
2716623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 211
Target Start/End: Complemental strand, 2719776 - 2719717
Alignment:
| Q |
153 |
tggataaattgttatcatatttctttatgccataattta-tatttatgtctttatttggt |
211 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| || || |||||| |||||||||| |
|
|
| T |
2719776 |
tggatcaattgttatcatatttctttatgccataatatattagttatgtatttatttggt |
2719717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 2716771 - 2716709
Alignment:
| Q |
56 |
gttgagatataatctaatcaatgtctctagtattatctatagatggtactgatatattataca |
118 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
2716771 |
gttgggatataggctaatcaatgtctctagtattatctacttatagtactgatatattataca |
2716709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 2719865 - 2719803
Alignment:
| Q |
56 |
gttgagatataatctaatcaatgtctctagtattatctatagatggtactgatatattataca |
118 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
2719865 |
gttgggatataggctaatcaatgtctctagtattatctacttatagtactgatatattataca |
2719803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University