View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13522_low_1 (Length: 365)
Name: NF13522_low_1
Description: NF13522
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13522_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 32992446 - 32992791
Alignment:
| Q |
1 |
caaataatatgaaacaaacaaatattacaaataagatatacaatataagatgaagaaaatatttgttatctagttcaaacttagttaaaatgattgaatc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| | |
|
|
| T |
32992446 |
caaataatatgagacaaacaaatattacaaataagatata-----taagatgaagaaaatatttgtt------ttcaaacttagttaaaatgattgaacc |
32992534 |
T |
|
| Q |
101 |
aactgaaccatgactcaaaaatctaatcgaatcaattctagttttaaaacattgttttacttggacaccttgaaagctccatgacctatagcaggacaga |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32992535 |
aactgaactatgactcaaaaatctaatcgaatcaattctagttttaaaacattgttttacttggacaccttgaaagctccatgacctatagcaggacaga |
32992634 |
T |
|
| Q |
201 |
tttggacttgaaagctcaattctcaatttttgttttgggtctaaaattgtacatttgtgtagtggggaccactcatcaatgaagcaaggtcactattggg |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
32992635 |
tttggacttgaaagctcaattctcaatttttgttttgggtctaaaattgtacatttgtgtagtggggaccactcaccaatgaagccaggtcactattggg |
32992734 |
T |
|
| Q |
301 |
ggcattggcatataataaaactaattaatctaaatcaacttgagttggatattcttcgac |
360 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
32992735 |
ggcattggcat---ataaaactaattaatctaaatcaacttgagttggattttcttcgac |
32992791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University