View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13523_high_10 (Length: 315)
Name: NF13523_high_10
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 315
Target Start/End: Original strand, 2596330 - 2596639
Alignment:
| Q |
6 |
caattattattatactctatgctttgtcttatcaacattactctttcaatacatggatgaatactaacaccaataccaagatgaaactcctttaattttg |
105 |
Q |
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| T |
2596330 |
caattattattatactctatgctttgtcttatcaacattactctttcaatacatggatgaatactaacaccaataccaagatgaaactcctttaattttg |
2596429 |
T |
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| Q |
106 |
caccataccttgttaaacttccacatctaaatctcactgtatctactttgatgcctgataaatttgaaggtagcttcactgattgtggtattcctgtctt |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596430 |
caccataccttgttaaacttccacatctaaatctcactgtatctactttgatgcctgataaatttgaaggtagcttcactgattgtggtattcctgtctt |
2596529 |
T |
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| Q |
206 |
gaagtctttgtctaatgacttgaatgtgtgatctcttatgaggaggtcaagaacatgaactgatttgatattctgagcataagatccatgaaattccaat |
305 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2596530 |
gaagtctttgtctaatgacttgaatgtatgatctcttatgaggaggtcaagaacatgaactgatttgatattctgagcataagatccatgaaattccaat |
2596629 |
T |
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| Q |
306 |
gacaacaatg |
315 |
Q |
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|||||||||| |
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| T |
2596630 |
gacaacaatg |
2596639 |
T |
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