View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13523_high_11 (Length: 313)
Name: NF13523_high_11
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 78 - 284
Target Start/End: Complemental strand, 19898207 - 19897992
Alignment:
| Q |
78 |
tgatgttttgcccagactttgattgaaaagaacatgagaaaattg---------tatgaaaaaacccaattatagtgataatattgtgcttataaatgcg |
168 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19898207 |
tgatgttttgcccagactttgattgaaaagaacatgagaaaattgcgacaattgtatgaaaaaacccaattacagtgataatattgtgcttataaatgcg |
19898108 |
T |
|
| Q |
169 |
ggtaatannnnnnnnnattctactcattttattcctttcattctctacccttcagacacaccacatacacatttctctctataaaataaaaaatcaacta |
268 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19898107 |
ggtaatatttttttttattctactcattttattccttttattctctacccttcagacacaccacatacacatttctctctataaaataaaaaatcaacta |
19898008 |
T |
|
| Q |
269 |
tgtcgtatgattttct |
284 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19898007 |
tgtcgtatgattttct |
19897992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 30621135 - 30621200
Alignment:
| Q |
17 |
cagaacctgtgatttcattagggttgaacccaaaacgagaagccaccgtttgatcttgtgttgatg |
82 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30621135 |
cagagcctgagatttcattagggttgaacccaaaacgggaagccaccgtttgatcttgtgttgatg |
30621200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University