View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13523_high_2 (Length: 386)
Name: NF13523_high_2
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 31808881 - 31808688
Alignment:
| Q |
28 |
ctttctttcaacctcttactattgaaacattgattctttatatactggttgaaaaagttatcaaaagtagttcacttatgagttggttggacagttcaca |
127 |
Q |
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| T |
31808881 |
ctttctttcaacctcttactattgaaacattgattcttta-atactggttgaaagagttatcaaaagtagttcacttatgagttggttggacagttcaca |
31808783 |
T |
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| Q |
128 |
attacatttccttctctatcagcacaatacaatacaatgcattaggagaaaagcaagcatatgaactaacataaacacattcgcaaagagacact |
222 |
Q |
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| T |
31808782 |
attacatttccttctctatcagcacaatacaatacaatgcattaggagaaaagcaagcatatgaactaacataaacacattcgcaaagagacact |
31808688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 371
Target Start/End: Complemental strand, 31808579 - 31808536
Alignment:
| Q |
328 |
cacactttccctccccaacttagataaaaccctagatgatgatg |
371 |
Q |
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| T |
31808579 |
cacactttccctccccaacttagataaaaccctagatgatgatg |
31808536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 159
Target Start/End: Complemental strand, 30913506 - 30913374
Alignment:
| Q |
29 |
tttctttcaacctcttactattgaaaca-ttgattctttatatactggttgaaaaagtt-atcaaaagtagttcacttatgagttggttggacagttcac |
126 |
Q |
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| T |
30913506 |
tttctttcaacatctgattattgaaacagttgattccttatctgatggttgggaaagtttatcaaaagtaatttacttataagttagttggacagtttgt |
30913407 |
T |
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| Q |
127 |
aattacatttccttctctatcagcacaatacaa |
159 |
Q |
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| T |
30913406 |
aatttcaattccttccctgtcagcacaatacaa |
30913374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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