View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13523_high_5 (Length: 348)
Name: NF13523_high_5
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 43601739 - 43602040
Alignment:
| Q |
18 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcaatggcaattggcaaatgctgatataaatctgggcatatgctagactgagtacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43601739 |
aacctgtggttattataattttaatgatgctttgtgcgaagttgcattggcaattggcaaatgctgctataaatctgggcatatgctagactgagtacaa |
43601838 |
T |
|
| Q |
118 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43601839 |
ctgaaagggaactgagaattatgtctccaattgatatgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttg |
43601938 |
T |
|
| Q |
218 |
tctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaattgttatccacttaacttaacc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43601939 |
tctctgaaaacagttccacttgacaataatttgcagtctgtcacgtgcatcacgtgccagagctattaatttatagaatcgttatccacttaacttaacc |
43602038 |
T |
|
| Q |
318 |
ag |
319 |
Q |
| |
|
|| |
|
|
| T |
43602039 |
ag |
43602040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 22436340 - 22436220
Alignment:
| Q |
153 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgcacatgataaagttgtctctgaaaacagttccacttgacaataatttgca |
252 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |||| | ||| |||||| ||||||||||||||| |
|
|
| T |
22436340 |
atgatatcttaaaattatgaaaatgatttctgcaccaaaacatactcccgcacatgataaagttgcctcttataacggttccaattgacaataatttgcg |
22436241 |
T |
|
| Q |
253 |
gtctgtcacgtgcatcacgtg |
273 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
22436240 |
gtctgtcacatgcatcacgtg |
22436220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 22239135 - 22239084
Alignment:
| Q |
153 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgca |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22239135 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccgca |
22239084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 153 - 204
Target Start/End: Complemental strand, 37560653 - 37560602
Alignment:
| Q |
153 |
atgatatcttcaaattatgaaaattatttctgcaccaaaacacagccccgca |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37560653 |
atgatatcttaaaattatgaaaattatttctgcaccaaaacacagtcccgca |
37560602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University