View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13523_high_6 (Length: 343)
Name: NF13523_high_6
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 10064900 - 10064568
Alignment:
| Q |
1 |
agccaagaaacatcattctgacatagaaaatccagttgcttcaactatcatcaacttgagtgtgaaaaatgaaactgggaaatgcagttgtgatttctct |
100 |
Q |
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| T |
10064900 |
agccaagaaacatcattctgacatagaaaatgcagttacttcaattatcatcaacttgcgtgtgaaatatgaaactgggaaatgcagttgtgatttctct |
10064801 |
T |
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| Q |
101 |
gccaacaaaacaa-----tttgtgagaggttagatgctagggcatggtaacgaaatcctaatcattgttcaattaaacatgtttccaattccttgagata |
195 |
Q |
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| T |
10064800 |
gcaaaaaaaataaaacagtttgcgagaggttagatgctagggcatggtaacaaaatcctaatcattgttcaattaaacatgtttccaattccttgagata |
10064701 |
T |
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| Q |
196 |
aaaaatatagatatattcaagatgctaactaggaccaaatcaaagtcattattcaggcttgtatattaactacatggtccaatattctgtctctagataa |
295 |
Q |
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| T |
10064700 |
caaaatatagatatattcaagatgctaactacggcaaaatcaaagtcattattcaggcttgtatattaactacatagtccaatactccatctctagataa |
10064601 |
T |
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| Q |
296 |
tattttctaaccatatgatgatacatgactagggaa |
331 |
Q |
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| T |
10064600 |
tattttctaaccata---tgatacatgactagggaa |
10064568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10033069 - 10032898
Alignment:
| Q |
1 |
agccaagaaacatcattctgacatagaaaatccagttgcttcaactatcatcaacttgagtgtgaaaaatgaaactgggaaatgcagttgtgatttctct |
100 |
Q |
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| T |
10033069 |
agccaagaaacatcaatctgaca--gaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctct |
10032972 |
T |
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| Q |
101 |
gccaacaaaacaatttgtgagaggttagatgctagggcatggtaacgaaatcctaatcattgttcaattaaacat |
175 |
Q |
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| T |
10032971 |
gcaaac-aaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacat |
10032898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 10054981 - 10054810
Alignment:
| Q |
1 |
agccaagaaacatcattctgacatagaaaatccagttgcttcaactatcatcaacttgagtgtgaaaaatgaaactgggaaatgcagttgtgatttctct |
100 |
Q |
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| T |
10054981 |
agccaagaaacatcaatctgaca--gaagatgcagttgcttcaatcatcatcaacttgagtatggaatatgaaactaggaaatgtggttgtgatttctct |
10054884 |
T |
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| Q |
101 |
gccaacaaaacaatttgtgagaggttagatgctagggcatggtaacgaaatcctaatcattgttcaattaaacat |
175 |
Q |
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| T |
10054883 |
gcaaac-aaacaatttgagagatgttagattgtaaagcttggtaacaaaatgctaatcgatgtttaattaaacat |
10054810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 10032867 - 10032750
Alignment:
| Q |
170 |
aaacatgtttccaattccttgagataaaaaatatagatatattcaagatgctaactaggaccaaatcaaagtcatt-------attcaggcttgtatatt |
262 |
Q |
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||||||| |||||||| ||||||| | |||||||||||||| ||||||||||||||| || |||||||||||||| ||| ||||||||||||| |
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| T |
10032867 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
10032768 |
T |
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| Q |
263 |
aactacatggtccaatat |
280 |
Q |
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| T |
10032767 |
aactacataatccaatat |
10032750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 10054779 - 10054662
Alignment:
| Q |
170 |
aaacatgtttccaattccttgagataaaaaatatagatatattcaagatgctaactaggaccaaatcaaagtcatt-------attcaggcttgtatatt |
262 |
Q |
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||||||| |||||||| ||||||| | |||||||||||||| ||||||||||||||| || |||||||||||||| ||| ||||||||||||| |
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| T |
10054779 |
aaacatgcttccaatttcttgagaaacaaaatatagatatactcaagatgctaactatgaaaaaatcaaagtcattgattaggatttaggcttgtatatt |
10054680 |
T |
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| Q |
263 |
aactacatggtccaatat |
280 |
Q |
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| T |
10054679 |
aactacataatccaatat |
10054662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 10075489 - 10075376
Alignment:
| Q |
46 |
tatcatcaacttgagtgtgaaaaatgaaactgggaaatgcagttgtgatttctctgccaacaaaacaatttgtgagaggttagatgctagggcatggtaa |
145 |
Q |
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| T |
10075489 |
tatcttcaacttgagagtgaaatacgaagctgggaaatttagttgtgatttctctgcaaataaaacaatttgtacgatgttagattctagagctaggtaa |
10075390 |
T |
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| Q |
146 |
cgaaatcctaatca |
159 |
Q |
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| T |
10075389 |
caaaatgctaatca |
10075376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 10259863 - 10259809
Alignment:
| Q |
46 |
tatcatcaacttgagtgtgaaaaatgaaactgggaaatgcagttgtgatttctct |
100 |
Q |
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| T |
10259863 |
tatcttcaacttgagagtgaaatacgaaactaggaaatgtagttgtgatttctct |
10259809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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