View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13523_high_8 (Length: 319)
Name: NF13523_high_8
Description: NF13523
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13523_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 40945380 - 40945070
Alignment:
| Q |
1 |
attagcacctttcaatgctgcacaacaaggtttcgatggtggaatctttggcccatccttttcgacgaaacgtttacattgagatataatgctaggaata |
100 |
Q |
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| T |
40945380 |
attagcacctttcaatgctgcacaacaaggtttcgatggtggaatctttggcccatccttttcgacgaaacgtttacattgagatataatgctaggaata |
40945281 |
T |
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| Q |
101 |
ttaccaccacattcaacttgagcataaattcctatcactaaaatgcttgcagtgagcacaactgttgcaaagcctaagtatctagttgccatgatcacaa |
200 |
Q |
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| T |
40945280 |
ttaccaccacattcaacttgagcataaattcctatcactaaaatgcttgcagtaagcacaactgttgcaaagcctaagtatctagttgccatgatcacaa |
40945181 |
T |
|
| Q |
201 |
accttagtattttctcaaattaacaatcaattcttaatatgtgggaataggatgaacgattgttaacttatgacaactgcaacactagataacagtttat |
300 |
Q |
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| T |
40945180 |
accttagtattttctcaaattaacaatcaattcttaatatgtgggaataggatgaacgattgttaacttatgacaactgcaacactagataacagtttat |
40945081 |
T |
|
| Q |
301 |
atagaataatc |
311 |
Q |
| |
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||||||||||| |
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| T |
40945080 |
atagaataatc |
40945070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 192
Target Start/End: Complemental strand, 40953412 - 40953323
Alignment:
| Q |
103 |
accaccacattcaacttgagcataaattcctatcactaaaatgcttgcagtgagcacaactgttgcaaagcctaagtatctagttgccat |
192 |
Q |
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| T |
40953412 |
accaccacattcaaattgaccagaaattcctaacactaagatgcttgtagtaataactaatgttacaaagcttaagcatctagttgccat |
40953323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 195
Target Start/End: Complemental strand, 40959895 - 40959803
Alignment:
| Q |
103 |
accaccacattcaacttgagcataaattcctatcactaaaatgcttgcagtgagcacaactgttgcaaagcctaagtatctagttgccatgat |
195 |
Q |
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|||||||||||||| |||| || ||||||||| |||||| |||||| | | || || | ||||| |||| ||||||||||||||||||||| |
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| T |
40959895 |
accaccacattcaaattgaccagaaattcctaccactaagatgcttacggcaagaactaatgttgtaaagtgtaagtatctagttgccatgat |
40959803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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