View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13524_low_1 (Length: 397)
Name: NF13524_low_1
Description: NF13524
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13524_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 15 - 397
Target Start/End: Original strand, 45709593 - 45709975
Alignment:
| Q |
15 |
atcccaaacaaaaatcaacagccaactaagcaccacatttaccaccaaaccaaccaaagaaacccaagcaatcacacctgttttcagctggcattgtaga |
114 |
Q |
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| T |
45709593 |
atcccaaacaaaaatcaacagccaactaagcaccacatttaccaccaaaccaaccaaagaaacccaagcaatcacaccagttttcagctggcattgtaga |
45709692 |
T |
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| Q |
115 |
aacctctgaagaggaaactgaaatgcaaaactgaaatgcaaaggtataagccagatagccacaataccactccattctgccacgtcatcaggttgtccta |
214 |
Q |
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| T |
45709693 |
aacctctgaagaggaaactgaaatgcaaaactgaaatgcaaaggtataagccagatagccacaataccactccattctgccacgtcatcaggttgtccta |
45709792 |
T |
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| Q |
215 |
gaagtttgagaattggagtggcaaagatataaaacggcaacagtaaaaaacaacaaaggaacagaacaatccaagatctttgtaggtatattcctaataa |
314 |
Q |
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| T |
45709793 |
gaagtttgagaattggagtggcaaagatataaaacggcaacagtaaaaaacaacaaaggaacagaacaatccaagatctttgtaggtatattcctaataa |
45709892 |
T |
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| Q |
315 |
gttatgtttctttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaactagctccatcataaaaacc |
397 |
Q |
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| T |
45709893 |
gttatgtttctttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaactagctccatcataaaaacc |
45709975 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 289 - 376
Target Start/End: Original strand, 29112164 - 29112251
Alignment:
| Q |
289 |
gatctttgtaggtatattcctaataagttatgtttctttgccccaaaagcttgcccacaaagtgtctccaatgcgcttgccatcccca |
376 |
Q |
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| T |
29112164 |
gatctttgcatgtatattcctaacatgtctagtttccctgctccgaaagcttgtccacatagtgtctccaatgcgcttcccatcccca |
29112251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 6588294 - 6588342
Alignment:
| Q |
331 |
ccaaaagcttgcccacaaagtgtctccaatgcgcttgccatccccaact |
379 |
Q |
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| T |
6588294 |
ccaaatgcttgcccacatagtgtctccaatgcacttcccatacccaact |
6588342 |
T |
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